| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_4458 |
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| Symbol | |
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| ID | 6113428 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | + |
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| Start bp | 4919003 |
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| End bp | 4920724 |
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| Gene Length | 1722 bp |
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| Protein Length | 573 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641624253 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001751307 |
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| Protein GI | 170723619 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | [TIGR02996] repeat-companion domain TIGR02996 |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 43 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACAGAC CCTACGCACT GCTGCTTGCC TTCGCCCTGC TCCAGGGCTG CCAGAGCCTG
GCCCCGCAAA AGGCCGAGCC TCCCGTTGCC GAAGCCGGCA AGGCCGAGGC CGAGAAGCCC
GTGGTGTATG GGTCGTTCAA GCAGGACACG CTCTACAGCC TGCTGGTGGC CGAACTGGCC
GGCCAGCGCA ACCGGTTTGA TATCGCCTTG GCAAACTACA CCGACCAGGC CGAAAAAACC
CAGGACCCGG GCGTGTCCGA GCGTGCCTAC CGCATAGCCG AATACCTCGG CGCCGACGAG
CCGGCCCTGG ACAGCGCTTT GATCTGGGCC CGCAACGACC CGCAGAACCT CGACGCCCAG
CGCGCCGCTG CCATCCAGCT GGCGCGGGCA GGCCGCTATG ACGACTCCAT GACTTATATG
GAGAAGGTGC TGCAGGGCCA GGGCGATACG CACTTCGACT TCCTCGCCCT GTCGGCCGCA
GAGACCGACC AGAGCACCCG CGACGGCCTG ATGCAGAGTT TCGACCGCCT ACTGGTCAAG
TACCCCGACA ACAGCCAGCT GGTGTTCGGC AAGGCCCTGC TGCTGAACCA GGACGGCAAA
GCCGAAGAAG CCCTCGAACT GCTTGAAGCC CACCCGGCGC AGAATGGCGA GATAGCCCCG
ACCCTGCTTC GTGCCCGCCT GCTCCAGGCC CTGGACCGCG GCCCGGAAGC CCTGCCGCTG
CTGCGCGGGG CGATCCGCGA CAACCCGGAA GACAAGCGCC TGCGCCTGAC CTATGCGCGC
ACCCTGGTCG AACAGGACCG CATCGCCGAC GCCAAGGGCG AGTTCGTCAG CCTGGTCCAG
CAATACCCCG ATGACGACGA GCTGCGTTAC TCGCTGGCGC TGGTGTGCCT GGAGAACAAG
GACTGGGACG AAGCCGAGAG CTACCTGCGT GAGCTGATCG AGCGTGACAG CAACGTCGAC
GCCGCCCACT TGAACCTGGG CCGCATCGCC GAAGAACGCC ACGACCCGGC CGGCGCCCTG
CGCGAATACG CACTGGTCGG CCCGGGCCCG GATTACCTGC CGGCACAATT GCGTCAGGCC
GATATCCTTA TCGCCAACGG CCGTGGCACC GAGGCGTCCC GCCAGCTCGC CGAGGCGCGC
GAGGCGCAGC CGGAGCTCGC CACCCAGCTG TACCTGATCG AGTCGGAAAG CTACAGCAAC
AACAACAAGG ACGCCCAAGC CAACCAGGTG CTGCAACAGG CCATTCAGCG CTACCCGGAC
GACCTCAACC TGCTTTACAC CCGCGCCATG CTGGCCGAAA AGCGTGACGA CCTGCCGCAA
ATGGAAAAAG ACCTGCGCGC CATCATCGCC CGCGAACCGG AAAACGCCAT GGCGCTGAAC
GCCCTGGGCT ATACCTTGGC TGACCGCACG ACCCGTTACG GTGAAGCCAA GGCCCTGATC
GAAAAGGCCT ATCAGCTGAC CCCGGACGAC CCGGCAATCC TCGACAGCAT GGGCTGGGTC
GCCTATCGCC TGGGCAACCT CGAAGAGGCC GAGCGTTACC TGCGCCAGGC CCTGGAGCGC
TTCCCCGACC ATGAAGTGGC TGCTCACCTG GGTGAGGTTC TGTGGGCCAA CGGCAAGCGC
CGTGAAGCTC GCCAGGTATG GGCCAAGGCC TTCGAGGCCC AGCCCGACAG CCCTATCCTG
CGCAAGACCG TCTTGCGCCT GACCGGATCC GAGACCCTTT AA
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| Protein sequence | MNRPYALLLA FALLQGCQSL APQKAEPPVA EAGKAEAEKP VVYGSFKQDT LYSLLVAELA
GQRNRFDIAL ANYTDQAEKT QDPGVSERAY RIAEYLGADE PALDSALIWA RNDPQNLDAQ
RAAAIQLARA GRYDDSMTYM EKVLQGQGDT HFDFLALSAA ETDQSTRDGL MQSFDRLLVK
YPDNSQLVFG KALLLNQDGK AEEALELLEA HPAQNGEIAP TLLRARLLQA LDRGPEALPL
LRGAIRDNPE DKRLRLTYAR TLVEQDRIAD AKGEFVSLVQ QYPDDDELRY SLALVCLENK
DWDEAESYLR ELIERDSNVD AAHLNLGRIA EERHDPAGAL REYALVGPGP DYLPAQLRQA
DILIANGRGT EASRQLAEAR EAQPELATQL YLIESESYSN NNKDAQANQV LQQAIQRYPD
DLNLLYTRAM LAEKRDDLPQ MEKDLRAIIA REPENAMALN ALGYTLADRT TRYGEAKALI
EKAYQLTPDD PAILDSMGWV AYRLGNLEEA ERYLRQALER FPDHEVAAHL GEVLWANGKR
REARQVWAKA FEAQPDSPIL RKTVLRLTGS ETL
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