Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputW619_4383 |
Symbol | |
ID | 6113353 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida W619 |
Kingdom | Bacteria |
Replicon accession | NC_010501 |
Strand | + |
Start bp | 4839014 |
End bp | 4840198 |
Gene Length | 1185 bp |
Protein Length | 394 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 641624178 |
Product | HlyD family type I secretion membrane fusion protein |
Protein accession | YP_001751232 |
Protein GI | 170723544 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.915143 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 0.374406 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCAACC ATGAACTCCC CGCGTCCTAC CTGGATGGCC AGGACGATCA GGCCGTGCTG CGCGCAGGCC GCGTCATCAC CGTGTGTGCG CTGATGCTGG CCGCGTTCCT GGCCTGGGCC GCCTGGTTCG AGGTCACCGA AGTCTCTACC GGCACCGGCA AAGTGATCCC CAGCTCACGC GAGCAGGTGA TCCAGTCGTT CGAAGGCGGC ATCGTCGCCG AGATGAATGT GGCCGAAGGC GACCTGGTCG AGCGCGGCCA GGTGCTGGCC CAGCTCGACC CGACCAAGAC CGCCTCCAGC GTCGGTGAAA GCGAGGCCAA GTACCGTGCT GCCACGGCCA GCGTTGCGCG CTTGCGCGCC GAGGTCACCG GCAAGCCGCT GGCCTTCCCC GACAGCTTGC GCGATTCGCC GGACCTGATC GACGCCGAAA CCGCGCTGTA CCAGACCCGC CGCCGCGGCC TGGAACAGAC CCTGGCGGGC ATCGAGGACT CGCTGCGGCT GGTGCGCAGC GAACTGCAGA TCACCGAAAA CCTGGCCAAG ATGGGCGCCT CCAGCCGGGT CGAAGTGATC CGCCTCAACC GCCAACGCTC GGAACTCGAG CTCAAGGCCA ACGAAGCACG GTCCGATTAC CTGGTACGCG CCCGCGAAGA ACTGGCCAAG GCCAGCGCCG AAGCCGACAG CCTCTCGGAA GTGATCCGCG GACGCAGTGA TTCGCTGTCA CGCCTGACCT TGCGCTCGCC GGTGCGCGGC ATCGTCAAGG ACATCGAGGT CAACACCCTG GGCGGGGTGG TACAGCCCGG CGGGCAGGTG ATGAAGATCG TGCCGATGGA CGAACGCTTG CTGATCGAGA CGCGCATCGC CCCCCGGGAC ATCGCCTTCA TCCACCCCGA CCAGGCGGCC AAGGTGAAGA TCAGTGCCTA TGACTATTCG GTGTATGGCG GGCTGGAGGG CAAAGTGGTG GGCATCTCGC CCGATACCCT GCAGGATGAG GTGAAACCGG AGATCTATTA TTACCGGGTG TTCATCCGTA CCGAGCAGGA CAGCCTGCAG AACAAGGCCG GCAAGCGCTT TGCGATCGTG CCGGGGATGA TTGCCACGGT GGATATCCGC ACGGGCGAAA AAACCATTCT CGATTACCTG ATCAAGCCGC TGAACCGCGC CAAGGAGGCC TTGCGCGAGC GCTAA
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Protein sequence | MSNHELPASY LDGQDDQAVL RAGRVITVCA LMLAAFLAWA AWFEVTEVST GTGKVIPSSR EQVIQSFEGG IVAEMNVAEG DLVERGQVLA QLDPTKTASS VGESEAKYRA ATASVARLRA EVTGKPLAFP DSLRDSPDLI DAETALYQTR RRGLEQTLAG IEDSLRLVRS ELQITENLAK MGASSRVEVI RLNRQRSELE LKANEARSDY LVRAREELAK ASAEADSLSE VIRGRSDSLS RLTLRSPVRG IVKDIEVNTL GGVVQPGGQV MKIVPMDERL LIETRIAPRD IAFIHPDQAA KVKISAYDYS VYGGLEGKVV GISPDTLQDE VKPEIYYYRV FIRTEQDSLQ NKAGKRFAIV PGMIATVDIR TGEKTILDYL IKPLNRAKEA LRER
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