Gene PputW619_4383 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputW619_4383 
Symbol 
ID6113353 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida W619 
KingdomBacteria 
Replicon accessionNC_010501 
Strand
Start bp4839014 
End bp4840198 
Gene Length1185 bp 
Protein Length394 aa 
Translation table11 
GC content65% 
IMG OID641624178 
ProductHlyD family type I secretion membrane fusion protein 
Protein accessionYP_001751232 
Protein GI170723544 
COG category[V] Defense mechanisms 
COG ID[COG1566] Multidrug resistance efflux pump 
TIGRFAM ID[TIGR01843] type I secretion membrane fusion protein, HlyD family 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.915143 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value0.374406 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCAACC ATGAACTCCC CGCGTCCTAC CTGGATGGCC AGGACGATCA GGCCGTGCTG 
CGCGCAGGCC GCGTCATCAC CGTGTGTGCG CTGATGCTGG CCGCGTTCCT GGCCTGGGCC
GCCTGGTTCG AGGTCACCGA AGTCTCTACC GGCACCGGCA AAGTGATCCC CAGCTCACGC
GAGCAGGTGA TCCAGTCGTT CGAAGGCGGC ATCGTCGCCG AGATGAATGT GGCCGAAGGC
GACCTGGTCG AGCGCGGCCA GGTGCTGGCC CAGCTCGACC CGACCAAGAC CGCCTCCAGC
GTCGGTGAAA GCGAGGCCAA GTACCGTGCT GCCACGGCCA GCGTTGCGCG CTTGCGCGCC
GAGGTCACCG GCAAGCCGCT GGCCTTCCCC GACAGCTTGC GCGATTCGCC GGACCTGATC
GACGCCGAAA CCGCGCTGTA CCAGACCCGC CGCCGCGGCC TGGAACAGAC CCTGGCGGGC
ATCGAGGACT CGCTGCGGCT GGTGCGCAGC GAACTGCAGA TCACCGAAAA CCTGGCCAAG
ATGGGCGCCT CCAGCCGGGT CGAAGTGATC CGCCTCAACC GCCAACGCTC GGAACTCGAG
CTCAAGGCCA ACGAAGCACG GTCCGATTAC CTGGTACGCG CCCGCGAAGA ACTGGCCAAG
GCCAGCGCCG AAGCCGACAG CCTCTCGGAA GTGATCCGCG GACGCAGTGA TTCGCTGTCA
CGCCTGACCT TGCGCTCGCC GGTGCGCGGC ATCGTCAAGG ACATCGAGGT CAACACCCTG
GGCGGGGTGG TACAGCCCGG CGGGCAGGTG ATGAAGATCG TGCCGATGGA CGAACGCTTG
CTGATCGAGA CGCGCATCGC CCCCCGGGAC ATCGCCTTCA TCCACCCCGA CCAGGCGGCC
AAGGTGAAGA TCAGTGCCTA TGACTATTCG GTGTATGGCG GGCTGGAGGG CAAAGTGGTG
GGCATCTCGC CCGATACCCT GCAGGATGAG GTGAAACCGG AGATCTATTA TTACCGGGTG
TTCATCCGTA CCGAGCAGGA CAGCCTGCAG AACAAGGCCG GCAAGCGCTT TGCGATCGTG
CCGGGGATGA TTGCCACGGT GGATATCCGC ACGGGCGAAA AAACCATTCT CGATTACCTG
ATCAAGCCGC TGAACCGCGC CAAGGAGGCC TTGCGCGAGC GCTAA
 
Protein sequence
MSNHELPASY LDGQDDQAVL RAGRVITVCA LMLAAFLAWA AWFEVTEVST GTGKVIPSSR 
EQVIQSFEGG IVAEMNVAEG DLVERGQVLA QLDPTKTASS VGESEAKYRA ATASVARLRA
EVTGKPLAFP DSLRDSPDLI DAETALYQTR RRGLEQTLAG IEDSLRLVRS ELQITENLAK
MGASSRVEVI RLNRQRSELE LKANEARSDY LVRAREELAK ASAEADSLSE VIRGRSDSLS
RLTLRSPVRG IVKDIEVNTL GGVVQPGGQV MKIVPMDERL LIETRIAPRD IAFIHPDQAA
KVKISAYDYS VYGGLEGKVV GISPDTLQDE VKPEIYYYRV FIRTEQDSLQ NKAGKRFAIV
PGMIATVDIR TGEKTILDYL IKPLNRAKEA LRER