Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputW619_4354 |
Symbol | |
ID | 6113324 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida W619 |
Kingdom | Bacteria |
Replicon accession | NC_010501 |
Strand | + |
Start bp | 4798294 |
End bp | 4799631 |
Gene Length | 1338 bp |
Protein Length | 445 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 641624149 |
Product | integrase family protein |
Protein accession | YP_001751203 |
Protein GI | 170723515 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0582] Integrase |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.0248698 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGTCCCTTC CTAAGGCTAA AACCCTTACC GTCACTATTA GTGACGCCGA GATTCGCCGC CATGCTGGCG GCGAAGTTCG TCAACTGCGC GACTCCCGTC ATCGAGAAAT TCGCTTCCGC TATTCCACAA CTGATCGCAC TCGCGGAGCG TGGCACGTCG TTGTAGATCA GGTATGGCGT AAAGCCGGTA GTTACCCCGG TATCAACACA AAGACCCTGC TAGCCACACT CCCCGAAATT TTGGCTCGGA GGGCGCTGGA TGTTTCGGCG ACATCGACCA CCACCAACTG GCGCACGGTC GGTGAACTGC TGGTGTGGTG GTTGGACCGG ATGGCGCGTG ATCGTGGTTT GTCGGTGAAG CGCAAGGCCA GCGCCAAATC TGCATTGAAT TGCCATCTAA TCCCGTGCCT GGGTGACCTT CCGCTTAACA ACGTGACCAA GTCCGAATTG GACCGCCGCA TAATGTGGCC TATGCAGGAG CGCTATGCGC TCTCGTTTGT GCGCTCAGTG TATGGAGTAC TCGCAGTGGC ATTTCGCCAA GCGATGCGGC TGGACATGCT CCGTGTTAAT CCAATGGAAA GTCTCAAGTA CACCGATTTT GTCCGAACTC GGATCAAGCC CAAGCCTGCT CGCCTGCGTG GCGACGATCT GCCAGCGTTG CTGAGTGATC TGGCGGATGG CTTTGAGGGC GAGCCGGCAG GAGTGATGCT GGCATTAATG ATGCTGTGCC ACGGCACCCG ATTGGGCGAA ACCCGGTTGG CGCGCTGGCG CAACATCAAC CTCGAAAGTG GCCAATGGTT CATCCCGGCA TGCGACACCA AGACTAAGGC TGAGCACAAG TTGCCGCTAT CGGCCCAGGC CTGCGCACTG CTGCATCGGT ATCGAGTTCG GCAGCAGACG GATGGCTACA ATGGGCCGCT GCTGTTTCCA GGCAATGCAG GCTCGGCTAT TAGCGCGAGC AAGGCCAGCA ACCTGTTCAC CGACTTAGCC AAAGCAGAAT GGTCCAGCCA TGATCTGCGT AAGGTGGCTC GCACTGCGTG GACTGACCTA GGTGTGGATT ACATGGTGGG AGAAATGCTG CTGAATCACG CGATGAAAGA TCTTGATGCC ACTTACATCC ACACCACTGC CGAGGGCTTG AAAAGGCGTG CGTTGGAGGG TTGGCACGAG CATTTAGACG CACTGGGCTT CAATCTGATT CATTCCCCAC CTTCCTGCAT CCTCCCTTGG GATGGACACA CGGAATCGCT GGAAGCCGCG CCCTTGCTGG CCTTGGACGA TAACCCCACC TCTCTCTGTC TCGGCGATGT ACCGGGCGAT ACCGGGCTTT GGCGCTGA
|
Protein sequence | MSLPKAKTLT VTISDAEIRR HAGGEVRQLR DSRHREIRFR YSTTDRTRGA WHVVVDQVWR KAGSYPGINT KTLLATLPEI LARRALDVSA TSTTTNWRTV GELLVWWLDR MARDRGLSVK RKASAKSALN CHLIPCLGDL PLNNVTKSEL DRRIMWPMQE RYALSFVRSV YGVLAVAFRQ AMRLDMLRVN PMESLKYTDF VRTRIKPKPA RLRGDDLPAL LSDLADGFEG EPAGVMLALM MLCHGTRLGE TRLARWRNIN LESGQWFIPA CDTKTKAEHK LPLSAQACAL LHRYRVRQQT DGYNGPLLFP GNAGSAISAS KASNLFTDLA KAEWSSHDLR KVARTAWTDL GVDYMVGEML LNHAMKDLDA TYIHTTAEGL KRRALEGWHE HLDALGFNLI HSPPSCILPW DGHTESLEAA PLLALDDNPT SLCLGDVPGD TGLWR
|
| |