Gene PputW619_4343 details

Gene Information

• Locus tag: PputW619_4343
• Symbol: secD
• ID: 6113312
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas putida W619
• Kingdom: Bacteria
• Replicon accession: NC_010501
• Strand: -
• Start bp: 4786038
• End bp: 4787900
• Gene Length: 1863 bp
• Protein Length: 620 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 641624137
• Product: preprotein translocase subunit SecD
• Protein accession: YP_001751192
• Protein GI: 170723504
• COG category: [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG0342] Preprotein translocase subunit SecD
• TIGRFAM ID: [TIGR00916] protein-export membrane protein, SecD/SecF family; [TIGR01129] protein-export membrane protein SecD

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 0.150095
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 6
• Fosmid unclonability p-value: 0.0000000819724
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGCTGAACA AATACCCTCT GTGGAAATAC GCACTGATCG TGTTGGTACT GGCGATCGGT 
TTTATTTATT CCGCTCCCAA CCTCTACCCG GATGACCCGG CGGTGCAGAT CAGCGGTGCC 
AGCTCGGCGC TGCAGGTGAA CCAGTCCGAC CTCGACCGCG TCAGCAAGGC GCTGACCGAA 
GCCGGTATCA CCGTCAAGGG TGCAAGCCTG GGTGAGAAGG GCAGCGCGCT GGTGCGCCTG 
AGCAACCAGG AAGACCAGCT GCCAGCCAAG GATGTAGTGC GCAAGGCACT GGGCGATGAT 
TATGTCGTGG CCCTGAACCT GGCCCAGACC ACTCCACAAT GGCTGCGTAA CCTGGGTGCA 
AGCCCGATGA AGCTGGGCCT GGACCTGTCC GGTGGTGTGC ACTTCCTGCT GGAAGTGGAC 
ATGGACAAGG CCATGAGCGC CCGCATGAAA GTCTACGAAG GCGAGGTCAA GACCTTGCTG 
CGCAAAGAGC GCGTCCGCTA CCGCAGCCTG CCTCAGCAGG ATGGCGGCAT CATGCTGGGC 
TTCGCCGACG ATGCCACCCG CGAACAGGCA CGTGCCCTGA TCCGCAAGAA TTTCAGTGAT 
TTCGACCTGA CCACCAGCGA GCGTAATGAA ACCGCCGTGC TGCGTCTGGC GCTGACTCAG 
GCGAAAGTCG CCGAGATCCG CGAATACTCG ATCAAGCAGA ACCTCACCAC CGTGCGCAAC 
CGCGTCAACG AGCTGGGCGT CGCCGAGCCG CTGGTTCAGC GCCAGGGCGC CAACCGCATC 
GTGGTCGAAC TGCCAGGTGT GCAGGACACT GCCGAAGCCA AGCGTATCCT CGGCAAGACG 
GCCAACCTGG AGTTCCGCTT CGGTGCCGAG CCGGGTGCAT CCAGGGCCAC TACCGAGGTC 
TTCGAGTTCC GTGAGGGCGG CCGTTCCGCC CAGGTCGAGC GTGGCCTGAT CATCACCGGT 
GACCAGGTCA CCGACGCCCA GGCCAGCTTC GACGAGCATG GACGCCCGCA GGTGAACATT 
CGCCTCGACG GCCACGGTGG CGAGCTGATG AGCCGCGCGA CCCGCAGCAA TGTCGGGCGC 
AGCATGGCGG TGATCTTCAT CGAGCAGAAG CCGGTTACCC GCTACGTCAA GCAGACTGTC 
AACGGCGTCG AGAAGGACGT GCCGGTGCAG AGCTTCCTGG AAGAGAAGAA GATCATCAGC 
CTGGCGACCA TCCAGTCGCC GCTGGGCAGC CAGTTCCGCA TCACCGGCCT TGACGGTCAG 
GGTGAATCGT CCGAACTGGC CCTGCTGCTG CGTGCCGGTG GCCTGGCCGC GCCGATGTAC 
TTCGCTGAGG AACGTACCAT CGGCCCAAGC CTGGGTGCCG ACAACATCAC CAAGGGTATC 
GATGCGTCGC TGTGGGGCAT GCTGTTCGTC TCGCTGTTCA TCATCGCCAT CTACCGCGCG 
TTCGGTGTGC TGGCAACCAT CGCCCTGGCG GGCAACATGG TCTTGCTGCT GGCATTGATG 
TCGCTGTTGG GTGCCACCCT TACCTTGCCG GGTATCGCCG GTATCGTGCT GACCATGGGT 
ATGGCGGTCG ACGCCAACGT ACTGATCTTC TCGCGTATCC GCGAAGAGAT CGCTGCCGGT 
ATGTCGGTGC AGCGCGCGAT TCATGAAGGC TTCAACCGGG CGTATTCGGC GATCGTCGAT 
GCCAACCTGA CCACCTTGCT GGTCGGCGGC ATCCTCTTTG CCATGGGTAC CGGCCCGGTC 
AAGGGCTTTG CCGTCACCAT GTCCCTCGGG ATTTTCACCT CGATGTTCAC CGCCGTCATG 
GTGACCCGTG CACTGGTCAA CCTGACCTGT GGCGGGCGTG ACATCAAGAA GCTGTGGGTT 
TGA 

 

Protein sequence

MLNKYPLWKY ALIVLVLAIG FIYSAPNLYP DDPAVQISGA SSALQVNQSD LDRVSKALTE 
AGITVKGASL GEKGSALVRL SNQEDQLPAK DVVRKALGDD YVVALNLAQT TPQWLRNLGA 
SPMKLGLDLS GGVHFLLEVD MDKAMSARMK VYEGEVKTLL RKERVRYRSL PQQDGGIMLG 
FADDATREQA RALIRKNFSD FDLTTSERNE TAVLRLALTQ AKVAEIREYS IKQNLTTVRN 
RVNELGVAEP LVQRQGANRI VVELPGVQDT AEAKRILGKT ANLEFRFGAE PGASRATTEV 
FEFREGGRSA QVERGLIITG DQVTDAQASF DEHGRPQVNI RLDGHGGELM SRATRSNVGR 
SMAVIFIEQK PVTRYVKQTV NGVEKDVPVQ SFLEEKKIIS LATIQSPLGS QFRITGLDGQ 
GESSELALLL RAGGLAAPMY FAEERTIGPS LGADNITKGI DASLWGMLFV SLFIIAIYRA 
FGVLATIALA GNMVLLLALM SLLGATLTLP GIAGIVLTMG MAVDANVLIF SRIREEIAAG 
MSVQRAIHEG FNRAYSAIVD ANLTTLLVGG ILFAMGTGPV KGFAVTMSLG IFTSMFTAVM 
VTRALVNLTC GGRDIKKLWV