| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_4180 |
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| Symbol | |
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| ID | 6113149 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | - |
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| Start bp | 4606182 |
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| End bp | 4608134 |
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| Gene Length | 1953 bp |
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| Protein Length | 650 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641623974 |
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| Product | general secretion pathway protein D |
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| Protein accession | YP_001751029 |
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| Protein GI | 170723341 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.304265 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGGTGA AATATTGCGT GGCGGCTGCC TTGACCCTGG CCCTTGCTGC GGCCTGGGCA
GAGGAGCCGG AAACCTTCGA TGACAACGGC ACCCCCCTTT ACGAGGTGAA CTTCGTCGAC
ACCGAGCTGG GCGAATTCAT CGACAGCGTG TCGCGCATCA CCGGCACCAC CTTCATCGTC
GACCCGCGGG TCAAAGGCAA GGTCACGGTG CGTACCGTCG ACCGCCACGA TGCCGATGCC
ATCTACGACA TCTTTCTAGC CCAGCTGCGT GCCCAAGGCT ATGCCGCGGT CGATCTGCCC
AATGGCAGTG TGAAGATCGT CCCCGACCAG GCCGCGCGCC TTGAACCGGT GCCGGTGGAA
GCCGCCGGCA AGCACGGCGA AGGCAGTGAT GGTGTGGCCA CCCGCGTATT CAATGTGCGT
AACGCCGCCA GCGAGCAGAT GCTCGGTATT CTCAAGCCGC TGATCGACCC CCGTGTCGGT
GTGATCACCC CTTATCCTGC GGCCAACCTG CTGGTGGTCA CCGATTGGCG CAGCAACCTC
GAACGCATCG ACAGCCTGTT GCGCCAGCTT GACCAGGTCA GTGACGAACC CTTGAAGGTC
ATGCCCCTGC GCCATGCCAG CGCCGCCGAT ACCGCGCAGC TGCTGACCCG CCTGTTGGCC
CGAGAGCAGG GCGCCGACAG CACCCAGGTG GTGGCTGACC CGCGTAGCAA TGCCTTGCTG
GTACGTGGCA GCACCGACCG TGTGCGAGCC CTGTTGGGCC AGCTCGATCA GCCCAGTGAG
AACCGGCACA GCAGCAACAC GCAGGTGATC TACCTGCGCC ATGCCAATGC TGGCGAAGTG
GTGAAGGTGC TGCGCGGGCT GAGCCAGGAA GGCGGTGTGC CCAGCGAGGG CGCAGGCGAA
GGCGAGGCCA AGGACAAGCC GGTGATGGCC GCCGCCAGCG ATTCGGGCAT ACGCCTGGAG
TACGAGGAGG GCACCAACGC CGTGGTCATG GTCGGCCCCG ACAGCGAGCT GGCCGCCTAC
CGCTCCATCG TCGAGCAGCT GGACATCCGC CGCGCCCAGG TAGTGGTCGA GGCCATCATC
GCCGAAGTGT CCGACAGCCG CGCCCAGGAG CTTGGCGTGC AGTGGCTGTT CGCCGACGAA
AAGTTCGGCG CCGGCATCGT CAACTTCGGC AGCAACGGGG TGAACATCGC CAACATCGCG
GGCGCCGCGG CCAGCGGCGA CAACGAAGCG CTGGGCGACC TGCTGTCGGC CACGACAGGC
GTGACTGCCG GCATCGGCCA CTTCGGCGGT GGCTTCAACT TCGCCATGCT GATCAACGCA
CTGAAGGGCA AAAGCGGCTT CAACCTGCTG TCCACGCCGA CCCTGCTGAC CCTGGACAAC
GCCGAGGCAT CGATCCTGGT CGGCCAGGAA GTGCCCTTCG TCACCGGCTC CGTGACGCAG
AACAACGCCA ACCCCTACCA GACCATCGAG CGCAAGGAAG TCGGGGTGAA GCTGCGCATC
AAGCCGCAGA TCAACATCGA CAACAGCGTA CGCCTGGATA TCGTTCAGGA AGTCTCGTCG
ATCGCCGACT CCAGCGCCGC CAGCGATGTG ATCACCAACA AGCGCGAGAT CAAGACCAAG
GTCATGGTCG AAGACAATGG CCTGGTGATT CTTGGCGGCC TGATCAGCGA TGAGCTGAGC
ACCAGCGATC AACGCGTACC GTTTCTCGGG GATATTCCGG GGCTGGGCCG GCTGTTCCGT
TCCGAGGCCA GCAAGAACAC CAAGCAGAAC CTGATGGTCT TCATCCGCCC GCGCATCCTG
CGTGACGGGC CGAGCCTGGC GGGTTTGAGC GAAGACAAGT ACCGCACCTT GCAGCAGACC
ACGCCGCTCA AGCTGCCAGG CCTTGCGCAG GACGGCCAGC TGCTGCGGGT ATTCCCGGCC
AGCCGCGCGC GCCTGGACGG GGGTGACTGG TGA
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| Protein sequence | MLVKYCVAAA LTLALAAAWA EEPETFDDNG TPLYEVNFVD TELGEFIDSV SRITGTTFIV
DPRVKGKVTV RTVDRHDADA IYDIFLAQLR AQGYAAVDLP NGSVKIVPDQ AARLEPVPVE
AAGKHGEGSD GVATRVFNVR NAASEQMLGI LKPLIDPRVG VITPYPAANL LVVTDWRSNL
ERIDSLLRQL DQVSDEPLKV MPLRHASAAD TAQLLTRLLA REQGADSTQV VADPRSNALL
VRGSTDRVRA LLGQLDQPSE NRHSSNTQVI YLRHANAGEV VKVLRGLSQE GGVPSEGAGE
GEAKDKPVMA AASDSGIRLE YEEGTNAVVM VGPDSELAAY RSIVEQLDIR RAQVVVEAII
AEVSDSRAQE LGVQWLFADE KFGAGIVNFG SNGVNIANIA GAAASGDNEA LGDLLSATTG
VTAGIGHFGG GFNFAMLINA LKGKSGFNLL STPTLLTLDN AEASILVGQE VPFVTGSVTQ
NNANPYQTIE RKEVGVKLRI KPQINIDNSV RLDIVQEVSS IADSSAASDV ITNKREIKTK
VMVEDNGLVI LGGLISDELS TSDQRVPFLG DIPGLGRLFR SEASKNTKQN LMVFIRPRIL
RDGPSLAGLS EDKYRTLQQT TPLKLPGLAQ DGQLLRVFPA SRARLDGGDW
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