| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_4155 |
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| Symbol | trmD |
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| ID | 6113124 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | - |
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| Start bp | 4581568 |
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| End bp | 4582320 |
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| Gene Length | 753 bp |
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| Protein Length | 250 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 641623949 |
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| Product | tRNA (guanine-N(1)-)-methyltransferase |
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| Protein accession | YP_001751004 |
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| Protein GI | 170723316 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0336] tRNA-(guanine-N1)-methyltransferase |
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| TIGRFAM ID | [TIGR00088] tRNA (guanine-N1)-methyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.113929 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 0.32465 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGGTAACC TTCGCGTAGA CGTCATCACG TTGTTCCCCG AGATGTTCTC GGCCATCACT
GAGTACGGCA TTACCAGCCG CGCGGTAAAA CAGGGGTTGC TTCAGGTGAC CTGCTGGAAC
CCGCGGGACT ACACCACAGA TCGCCACCAT ACAGTGGATG ATCGGCCGTT TGGCGGTGGC
CCGGGCATGG TGATGAAAAT CAAGCCTCTG GAAGACGCCT TGGTTAGCGC CAGGCAAGCG
ACCGGAGCAT CGGCAAAGGT GATTTACCTT TCGCCGCAAG GCCGCAAGCT GACTCAGCAA
GCGGTCAAAG GCCTGGCCGA ACAGGAATCG CTGATCCTGA TCGCCGGTCG TTATGAAGGC
ATCGACGAGC GTTTTATCGA GGCTCATGTC GATGAGGAGT GGTCGATTGG CGACTATGTG
CTTTCCGGTG GCGAGCTGCC GGCCATGGTA CTGATCGATG CGGTTACACG GCTGCTGCCC
GGAGCTTTAG GGCATGTGGA CTCGGCGGAG GAAGACTCCT TCACCGACGG TCTGCTCGAT
TGCCCGCACT ACACCCGACC TGAGGTGTAT GCGGATCAGC GTGTTCCCGA CGTGTTGCTA
AGTGGCAACC ATGCACACAT CCGGCGTTGG AGAATGAAGC AGTCCCTTGG TAGGACCTTC
GAACGACGCG CCGATCTTCT GGAAAGTCGC TCGCTTTCTG GAGAAGAGAA GAAGCTGCTC
GAGGAATATC TCCGCGAGCG GGACGATAGT TAA
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| Protein sequence | MGNLRVDVIT LFPEMFSAIT EYGITSRAVK QGLLQVTCWN PRDYTTDRHH TVDDRPFGGG
PGMVMKIKPL EDALVSARQA TGASAKVIYL SPQGRKLTQQ AVKGLAEQES LILIAGRYEG
IDERFIEAHV DEEWSIGDYV LSGGELPAMV LIDAVTRLLP GALGHVDSAE EDSFTDGLLD
CPHYTRPEVY ADQRVPDVLL SGNHAHIRRW RMKQSLGRTF ERRADLLESR SLSGEEKKLL
EEYLRERDDS
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