| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_3878 |
|---|
| Symbol | |
|---|
| ID | 6112842 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida W619 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010501 |
|---|
| Strand | - |
|---|
| Start bp | 4311873 |
|---|
| End bp | 4313159 |
|---|
| Gene Length | 1287 bp |
|---|
| Protein Length | 428 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641623668 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_001750728 |
|---|
| Protein GI | 170723040 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.957409 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCCAA GCGGCGTGCA GCAACAGGTG CAATCCCCAC CTTCGACCGG GCCGTTCGCC
TGGTACCGCG ACATCGACTC CCAGCAACGG CGTACGTTCT GGAGCTGCAA GATCGGCTAT
GGCCTGGACG GCATGGACAC GCAGATGCTC AGCTTTGTCA TCCCCACGCT GATCATGCTG
TGGGGCATCA CCACGACCGA AGCCGGGCTG ATCCACACCA GCACCCTGAT TGCCTCGGCC
ATCGGCGGCT GGGTCGCCGG CATCCTCTCC GACCGCATTG GTCGCGTGCG CACCTTGCAA
CTGACGGTGC TGTGGTTCGC CTTTTTCACC TTCCTCTGCG GCTTCGCCCA GAACTACGAA
CAGTTGCTGC TCGCCCGGAC CCTTATGGGC TTTGGCTTTG GCGGCGAATG GACCGCCGGC
GCGGTGCTGA TCGGTGAGGT GATCCGCGCC CAGGACCGTG GCAAGGCGGT GGGCATGGTG
CAGTCCGGCT GGGCCATCGG CTGGGGCCTG ACGGCGATCC TTTATGCGCT GCTGTTCTCC
TGGCTACCGG CGGAGCAGGC GTGGCGCGCG CTGTTCCTGC TGGGGCTGGT ACCGGCCATT
TTCGTGATTT TCGTCCGGCG CCTGGTCAAA GACCCTGAGG TGTATCGCCA GGCCAAGGCA
GTGGAGAGCG CCGAGGCGCC CTCGCAGTTC TACGAGATCT TCGCCCCCGG CATGCTCTGG
ACCACAATAC GTGCGTCGCT GCTGACCACC GGTGCGCTGG GGGGCTACTA CGCCATCACC
TCGTGGCTGC CGACCTTCCT CAAGAACGAG CGCGGCTTGA GCGTGCTGGG TACCGGTGGC
TACCTGGCCA TGGTGATCGT CGGCTCCTAC ATCGGCTACG TCGTCAGCGC TTACCTGTCT
GACATTCTGG GGCGCAAGAA GAACTTCATC CTGTTCGCTG TGGGCTCGTT CATCATCGTG
CTGCTGTACA CCCAGATGCC GGTCAGCGAT GGCGTGATGC TGTGGCTGGG GTTCCCGCTG
GGCTTTTTCG CCTCGGGCAT CTTCAGCGGT ATGGGGGCCT TCCTCACCGA GCTGTTCCCC
ACTCGCATCC GTGGCTCGGG GCAGGGGTTC TGCTACAACA TCGGCAAGGT CATCGCCGCG
ATGTTCCCCT TGCTGATCGG CCTGCTTGGT CAGAAGGTGC CGCTGGGGCT GGGCATTGGC
GGGTTCGCCG CGGTGTCGTA CGGTGTGGTG ATTCTGGCAG CCTTGAGCCT GCCGGAAACC
CGCGGCAAAC ACCTCCAGGC GCGTTAA
|
|---|
| Protein sequence | MNPSGVQQQV QSPPSTGPFA WYRDIDSQQR RTFWSCKIGY GLDGMDTQML SFVIPTLIML
WGITTTEAGL IHTSTLIASA IGGWVAGILS DRIGRVRTLQ LTVLWFAFFT FLCGFAQNYE
QLLLARTLMG FGFGGEWTAG AVLIGEVIRA QDRGKAVGMV QSGWAIGWGL TAILYALLFS
WLPAEQAWRA LFLLGLVPAI FVIFVRRLVK DPEVYRQAKA VESAEAPSQF YEIFAPGMLW
TTIRASLLTT GALGGYYAIT SWLPTFLKNE RGLSVLGTGG YLAMVIVGSY IGYVVSAYLS
DILGRKKNFI LFAVGSFIIV LLYTQMPVSD GVMLWLGFPL GFFASGIFSG MGAFLTELFP
TRIRGSGQGF CYNIGKVIAA MFPLLIGLLG QKVPLGLGIG GFAAVSYGVV ILAALSLPET
RGKHLQAR
|
|---|
| |