| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_3811 |
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| Symbol | |
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| ID | 6112775 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | + |
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| Start bp | 4244221 |
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| End bp | 4245576 |
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| Gene Length | 1356 bp |
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| Protein Length | 451 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641623602 |
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| Product | HlyD family type I secretion membrane fusion protein |
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| Protein accession | YP_001750662 |
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| Protein GI | 170722974 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.00739118 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCCCATCG GCCACAGCGT GCGCAGTACC CACAGCAGCG CTGACAAGCG CACCGAACAC
GACTACATGC CAGAACTGGC CAGCGCCACC CTGCAAGACT CCCCGCGCCT GTCACGCCTG
ACCGTGTGGC TGGCAGCGGC GCTACTGCTG GCGGCAGTGA TCTGGGCAAG CCTGGCGGTG
CTCGACGAGG TGACTGTCGG CGAAGGCAAG GCGATCCCTT CGAGCAAGGT GCAGGTGGTG
CAGAACCTGG AGGGCGGCAT CGTCACCGAG ATTTTCGTGC GCGAAGGCCA GATGGTGGAC
AAAGGCGCCA CCCTGCTGCG CCTGGACGAC ACGCGGTTCA AGTCCAACAA AGGTGAAAGC
GAGGCCGACC GCTATGCCCT GACCGCACAG GTCGAGCGGC TGTCCGCCGA AGCCGAAGGA
CGGCCCTTTG TGCTGTCCGA GGAGGTCCGC GCCAAGGCGC CCCAGGTAGC CGAGGACGAA
CTGTCGCTGT ACGACTCGCG CCAGCGCCGC CTGGCCAGTG AAAAGCAGAC CCTCAACGAG
CAGTTGCGAC AGAAAACCCA AGAGCTGGCC GAGTTCCGTT CCAAGGTCGA ACAGTACCGC
TCGGCGGTAG GCCTGCTGCA GCAGGAACTA AACATGTCCG CGCCGCTGGT GAGCAAGGGT
GCCATTTCAC CGGTAGAAAT CCTGCGCCTC AAGCAACGTA CCGTGGAAGC TCGCGGCCAG
CTCAACGCCA CCAGCCTGGC CATCCCCCGC GCCGAGGCAG CCGTGGCCGA GATCAGGAGC
AAGATCCAGG AATCGGATGC CAGCTTCCGC TCCGAGGCCG CCAAGGAGCT CAACGACAAA
CGCACGGAGC TGTCGAAGAT CACCGCCACC AGCATCGCCA TCGACGACCG GGTCAACCGC
ACTACCGTGG TTTCGCCGGT GCATGGCATC GTCAAGATGC TCAAAGTCAA CACAATTGGC
GGCGTGGTGC AGCCGGGCAG CGACCTGGTG GAGATCGTGC CGATCGAGGA CAACCTGCTG
ATCGAGGCCA AGGTGCGGCC ACAGGACGTG GCATTCCTGC ACCCGGGGCA GCCGGCGATG
GTGAAGTTCA GCGCGTATGA CTACACCATT TATGGCGGCA TGAAGGCCAA GCTTGAGTTG
ATCAGTGCCG ATACCGTGAC CGATGACAAG GGCAATGCGT TTTACCTGAT TCAGGTGCGC
ACCGAGAAGA ACCACCTGGG AGGCGATAAC AAACCGCTGC TGATCATCCC CGGGATGGTC
GCCACGGTAG ATATCATCAC CGGGCAGAAG AGTGTGCTGG ATTATCTGCT CAAGCCGGTG
CTCAAGGCAC GGACCGAGGC GTTGCGGGAG CGGTGA
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| Protein sequence | MPIGHSVRST HSSADKRTEH DYMPELASAT LQDSPRLSRL TVWLAAALLL AAVIWASLAV
LDEVTVGEGK AIPSSKVQVV QNLEGGIVTE IFVREGQMVD KGATLLRLDD TRFKSNKGES
EADRYALTAQ VERLSAEAEG RPFVLSEEVR AKAPQVAEDE LSLYDSRQRR LASEKQTLNE
QLRQKTQELA EFRSKVEQYR SAVGLLQQEL NMSAPLVSKG AISPVEILRL KQRTVEARGQ
LNATSLAIPR AEAAVAEIRS KIQESDASFR SEAAKELNDK RTELSKITAT SIAIDDRVNR
TTVVSPVHGI VKMLKVNTIG GVVQPGSDLV EIVPIEDNLL IEAKVRPQDV AFLHPGQPAM
VKFSAYDYTI YGGMKAKLEL ISADTVTDDK GNAFYLIQVR TEKNHLGGDN KPLLIIPGMV
ATVDIITGQK SVLDYLLKPV LKARTEALRE R
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