Gene PputW619_3778 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputW619_3778 
Symbol 
ID6112742 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida W619 
KingdomBacteria 
Replicon accessionNC_010501 
Strand
Start bp4200450 
End bp4202009 
Gene Length1560 bp 
Protein Length519 aa 
Translation table11 
GC content61% 
IMG OID641623569 
Producttranscriptional regulator, TyrR 
Protein accessionYP_001750629 
Protein GI170722941 
COG category[K] Transcription
[E] Amino acid transport and metabolism 
COG ID[COG3283] Transcriptional regulator of aromatic amino acids metabolism 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.18738 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.000851143 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCGTATCA AAGTGCATTG CCAGAACCGC ATCGGCATCC TTCGGGACAT CCTCAACCTG 
TTGGTGGAGT ACGGAATCAA CGTACTCCGT GGTGAAGTCG GCGGTGACCA TGGCAATGCC
ATCTACCTGC ATTGCCCGAA CCTCATCAAC CTGCAGTTCC AGGCTCTACG TCCGAAATTC
GAGTCGATTG CCGGGGTCTT CGGGGTCAAG CGTGTCGGCT TGATGCCCAG CGAGCGACGG
CACATGGAGC TCAACGCGCT GCTGGGGGCG CTGGATTTCC CGGTGCTGTC GGTCGACATG
GGCGGCAGCA TCGTCGCCGC CAACCGCACC GCCGCGCAGT TGCTGGGCGT GAGGGTCGAC
GAGGTGCCGG GCATCCCGTT GGCGCGCTAT GTAGAGGACT TTGACCTGCC GGAACTGGTG
CGGGCCAACA AATCTCGAAT CAATGGCCTA CGGGTCAAGG TCAAGGGTGA TATTTTCCTG
GCCGACATCG CACCTTTGCA GTCCGAGCAT GACGACAGCG AGGCATTGGC TGGCGCGGTG
TTGACCTTGC ACCGTGCCGA CCGCATCGGT GAGCGGATTT ACAACGTACG CAAACAGGAG
CTGCGCGGCT TCGACAGCAT CTTCCAGAGC TCGCGGGTGA TGGCGGCTGT GGTGCGTGAG
GCGCGGCGCA TGGCGCCGCT GGACGCGCCG CTGCTGATCG AAGGTGAGAC AGGTACAGGC
AAAGAGCTGT TGGCGCGTGC CTGCCACCTG GCCAGCCCGC GGGGGCAGGC GCCTTTGATG
GCCCTCAATT GTGCCGGCCT GCCAGAGTCC ATGGCGGAAA CCGAGCTGTT CGGTTATGGC
CCCGGCGCGT TCGAGGGGGC CCGCGCCGAA GGCAAACTGG GCCTTCTGGA GTTGACCGCT
GGCGGAACAC TGTTCCTCGA TGGGGTGGGG GAGATGAGCC CGCGTCTGCA GGTGAAGTTG
CTTCGCTTTC TGCAGGACGG CTGCTTCCGT CGCGTTGGCA GTGATGAAGA AGTTTACCTG
GATGTACGGG TGATCTGCGC AACCCAGGTG GACCTTTCCG AATTGTGCGC TCGGGGCGAA
TTCCGCCAGG ACCTGTACCA TCGCCTCAAT GTGTTGTCGT TGCACATACC GCCGTTGCGC
GAGTGCATGG ACGGCCTGGA AGGGTTGGTG CAGCACTTTC TCGATCAGGC CAGCCGGCAG
ATTGGTTGTG CCCTGCCGCG CCTGGCGCCT GCGGCGATGG ACAAACTGGC GCACTACCAT
TGGCCGGGCA ATGTCCGGCA ACTGGAAAAC GTATTGTTCC AGGCGGTATC GCTGTGCGAA
GGCGGAATAG TGAAAGGCGA ACATATCCGC TTGCCGGATT ACGGCGTGCG GCAGCCCTTG
GGTGAGTTTA CCCTTGAAGG TGATCTTTCG CAGATTATCG GGCGCTTCGA AAAGGCTGTA
CTGGAAAGTC TGATCGGGGA GTATCCAAGT AGCCGGGCGC TGGGCAAGCG GCTGGGTGTT
TCACATACAA CCATTGCTAA CAAGTTGCGG GATTATTCGC TGGGCAAATC GAATGAATGA
 
Protein sequence
MRIKVHCQNR IGILRDILNL LVEYGINVLR GEVGGDHGNA IYLHCPNLIN LQFQALRPKF 
ESIAGVFGVK RVGLMPSERR HMELNALLGA LDFPVLSVDM GGSIVAANRT AAQLLGVRVD
EVPGIPLARY VEDFDLPELV RANKSRINGL RVKVKGDIFL ADIAPLQSEH DDSEALAGAV
LTLHRADRIG ERIYNVRKQE LRGFDSIFQS SRVMAAVVRE ARRMAPLDAP LLIEGETGTG
KELLARACHL ASPRGQAPLM ALNCAGLPES MAETELFGYG PGAFEGARAE GKLGLLELTA
GGTLFLDGVG EMSPRLQVKL LRFLQDGCFR RVGSDEEVYL DVRVICATQV DLSELCARGE
FRQDLYHRLN VLSLHIPPLR ECMDGLEGLV QHFLDQASRQ IGCALPRLAP AAMDKLAHYH
WPGNVRQLEN VLFQAVSLCE GGIVKGEHIR LPDYGVRQPL GEFTLEGDLS QIIGRFEKAV
LESLIGEYPS SRALGKRLGV SHTTIANKLR DYSLGKSNE