| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_3514 |
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| Symbol | sdhA |
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| ID | 6112472 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | - |
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| Start bp | 3876250 |
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| End bp | 3878022 |
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| Gene Length | 1773 bp |
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| Protein Length | 590 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 641623301 |
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| Product | succinate dehydrogenase flavoprotein subunit |
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| Protein accession | YP_001750366 |
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| Protein GI | 170722678 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
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| TIGRFAM ID | [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup
[TIGR01816] succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.22318 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTAGCA TTCCAACCAT TTCCTTCGAC GCCATCATCA TCGGTGGCGG CGGCGCCGGC
ATGCGCGCAG CGCTGCAGCT GGCCCAGGGC GGTCACAAGA CTGCCGTGGT CACCAAGGTC
TTCCCGACCC GTTCGCACAC TGTTTCCGCC CAGGGCGGCA TCACCTGCGC CATCGCTTCG
GCCGACCCGA ACGACGACTG GCGCTGGCAC ATGTACGATA CCGTCAAAGG TTCCGACTAC
ATCGGTGACC AGGACGCTAT CGAATACATG TGCCAGGAAG GCCCTGCTGC GGTCTTCGAG
CTGGACCACA TGGGCCTGCC GTTCTCGCGT ACCGAAACCG GTCGTATCTA TCAGCGTCCG
TTCGGCGGCC AGTCCAAGGA CTTCGGCAAG GGCGGCCAGG CTGCGCGTAC CTGTGCTGCT
TCCGACCGTA CCGGCCACGC ACTGCTGCAC ACCCTCTATC AGGGCAACCT GAAAGCGGGC
ACCACCTTCC TGAACGAGTA CTACGCTGTT GATCTGGTGA AAAACCAGGA CGGCGCGTTC
GTGGGTGTGA TCGCGATCTG CATCGAAACC GGCGAAACCC TGTACATCAA GTCCAAGGCC
ACCGTATTGG CCACTGGCGG TGCGGGCCGT ATCTACGCCT CGACCACCAA CGCCCTGATC
AACACCGGTG ACGGCGTCGG CATGGCTCTG CGTGCCGGCG TGCCGGTGCA GGACATCGAA
ATGTGGCAGT TCCACCCGAC TGGCATCGCC GGCGCTGGTG TACTGGTCAC CGAGGGTTGC
CGCGGTGAGG GTGGTTACCT GATCAACGCC CATGGCGAGC GCTTCATGGA GCGTTACGCG
CCGAACGCGA AAGACCTTGC TGGTCGTGAC GTGGTCGCCC GTTCCATGGT CAAAGAGATC
ATCGCAGGCA ACGGCGTGGG CCCGAACAAG GACCACGTAC TGCTGAAGCT GGACCACCTG
GGCGAGGAAG TGCTGCACAG CCGCCTGCCA GGCATCTGCG AACTGTCCAA GACCTTCGCT
CACGTCGACC CGGTTGTAGC GCCGGTGCCG GTCGTGCCGA CCTGCCACTA CATGATGGGT
GGTGTTGCCA CCAACATCCA TGGCCAGGCC ATCACCATGG ACGCCGAAGG CAAGGACCAC
ATCATTCCGG GCTTGTTCGC CGTGGGTGAA GTGGCGTGCG TATCGGTTCA CGGTGCCAAC
CGCCTGGGCG GTAACTCGCT GCTCGACCTG GTCGTATTCG GCCGCGCCGC CGGCCTGCAC
CTGGAGAAGG CGCTGAGCGA AGGCGTCGAG TACCGCGATG CCAGCGATAC CGATGTCGAC
GTCGCCCTGA ACCGCCTGAA CAAGCTCAAC GAGCGTACCA CTGGCGAAGA CGTTGCAAGC
CTCAAGCGTG AGCTGCAAAG CTGCATGCAG AACTACTTCG GTGTATTCCG TACTGGCGAA
TACATGCAGA AGGGTATCGA GCAGCTGGCT GGTCTGCGTG ACCGCATCGC CAACGTGAAG
ATCAACGACA AGTCCCAGGC CTTCAACACC GCGCGTATCG AAGCGCTGGA GCTGCAGAAC
CTGTTGGAAG TCGCCGAAGC TACCGCCATC GCGGCCGAAG CCCGTAAAGA GTCCCGCGGC
GCTCACGCCC GTGAAGACTT CGAAGACCGT GACGACGAAA ACTGGCTGTG CCACACCCTG
TACTACCCGG GTGAGAAGCG CGTGGCCAAG CGTGGCGTCA ACTTTGCGCC GAAGACTGTT
CCAGCCTTCG AACCAAAAGT CCGGACTTAT TGA
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| Protein sequence | MASIPTISFD AIIIGGGGAG MRAALQLAQG GHKTAVVTKV FPTRSHTVSA QGGITCAIAS
ADPNDDWRWH MYDTVKGSDY IGDQDAIEYM CQEGPAAVFE LDHMGLPFSR TETGRIYQRP
FGGQSKDFGK GGQAARTCAA SDRTGHALLH TLYQGNLKAG TTFLNEYYAV DLVKNQDGAF
VGVIAICIET GETLYIKSKA TVLATGGAGR IYASTTNALI NTGDGVGMAL RAGVPVQDIE
MWQFHPTGIA GAGVLVTEGC RGEGGYLINA HGERFMERYA PNAKDLAGRD VVARSMVKEI
IAGNGVGPNK DHVLLKLDHL GEEVLHSRLP GICELSKTFA HVDPVVAPVP VVPTCHYMMG
GVATNIHGQA ITMDAEGKDH IIPGLFAVGE VACVSVHGAN RLGGNSLLDL VVFGRAAGLH
LEKALSEGVE YRDASDTDVD VALNRLNKLN ERTTGEDVAS LKRELQSCMQ NYFGVFRTGE
YMQKGIEQLA GLRDRIANVK INDKSQAFNT ARIEALELQN LLEVAEATAI AAEARKESRG
AHAREDFEDR DDENWLCHTL YYPGEKRVAK RGVNFAPKTV PAFEPKVRTY
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