| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_3465 |
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| Symbol | |
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| ID | 6112423 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | - |
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| Start bp | 3813839 |
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| End bp | 3816088 |
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| Gene Length | 2250 bp |
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| Protein Length | 749 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 641623252 |
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| Product | lysine decarboxylase |
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| Protein accession | YP_001750317 |
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| Protein GI | 170722629 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1982] Arginine/lysine/ornithine decarboxylases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.583785 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTACAAGG ACCTCAAGTT CCCCATCCTC ATTGTCCACC GCGCCATAAA GGCCGACAGC
GTTGCCGGCG AGCGTGTGCG GGGGATTGCC GAGGAACTGC GTCAGGACGG CTTCGCCATT
CTCGCCGCCG CAGACAATGC TGAAGCCCGT CTGGTCGCTG CCACCCATCA CGGGCTGGCC
TGCATGCTGA TCGCCGCCGA AGGCGTCGGC GAAAACACTC ACTTGTTGCA GAACATGGCC
GAGCTGGTAC GCCTGGCCCG CCAGCGTGCC CCGAACCTGC CAATATTCGC CCTGGGCGAA
CAGGTCACCC TGGAAAACGC CCCTGCTGAA GCGATGAGCG AGCTCAACCA GCTGCGCGGC
ATCCTTTACC TGTTCGAGGA TACCGTGCCG TTCCTCGCCC GCCAGGTAGC ACGTGCCGCA
CACAACTACC TCGACGGCTT GCTGCCGCCT TTCTTCAAGG CCTTGGTACA ACACACCGCG
CAGTCCAATT ATTCCTGGCA CACGCCCGGC CATGGCGGTG GCGTGGCTTA CCGCAAAAGC
CCGGTGGGCC AAGCCTTCCA TCAATTCTTC GGCGAGAATA CCTTGCGCTC GGACTTGTCC
GTCTCGGTGC CGGAACTGGG CTCGCTGCTC GATCACACTG GCCCTTTGGC AGCGGCCGAA
GCCAGGGCGG CGCGCAACTT TGGTGCCGAC CATACCTTCT TCGTGATCAA TGGCACCTCC
ACCGCCAACA AGATCGTCTG GCATGCCATG GTCGGCCGTG ATGACCTGGT GCTGGTGGAC
CGTAACTGCC ACAAGTCGGT GGTCCATGCC ATCATCATGA CCGGCGCCAT TCCCATCTAC
CTATGCCCGG AGCGCAACGA GCTGGGCATC ATCGGGCCGA TCCCGCTCAG CGAATTCAGC
GCCGAATCGA TCCAGGCCAA GGTGCGGGCC AACCCCTTGG CCAAAGGGCG CGAACCGCGC
ATCAAGCTGG CGGTGGTGAC CAATTCAACC TATGACGGGC TGTGTTATCA CGCCGGGCTG
ATCAAGCAAG CTCTGGGCAG CAGCGCCGAG GTGCTGCACT TCGATGAAGC CTGGTTCGCT
TACGCGGCGT TTCATGAGTT CTTCACGGGG CGCTATGCGA TGGGTACGGC CTGCACCGAG
GACAGCCCGT TGGTGTTCAG CACGCACTCT ACGCACAAGC TGCTGGCTGC CTTCAGCCAG
GCGTCGATGA TTCATGTGCA GGACGGCGCC CAGCGGCAAC TGGACCGTGG TCGCTTCAAT
GAAGCCTTCA TGATGCATAT TTCCACCTCG CCGCAGTACA GCATCCTCGC TTCTTTGGAT
GTGGCTTCGA CCATGATGGA GGGCCACGCA GGGCGCTCGC TGCTGCAAGA GATGTTTGAC
GAGGCACTGA GCTTTCGTCG CGCCCTGGCC AACCTGCGTG CACATATCGC TGCCACTGAT
TGGTGGTTCA GTATCTGGCA GCCGCCGGGG GCAGAAGGCA TCGATCAGCT CGCCGCGCAG
GACTGGCTGC TCCAACCTGG GGCGCAGTGG CATGGCTTTG GCGAATTGGC GGGCGATTAT
GTGCTGCTTG ACCCGCTCAA GGTCACCTTG GTGATGCCGG GGTTGCGGGC CGACGGGGTG
TTGGACGAGC AGGGCATTCC CGCGGCAGTG GTCAGCAAGT TTCTCTGGGA GCGCGGGTTG
GTGGTGGAGA AAACCGGCCT TTATAGCTTC CTGGTGCTGT TCTCGATGGG CATTACCAAG
GGCAAGTGGA GTACGCTGCT GACCGAGTTG CTGGAGTTCA AACGCCATTA TGATGGCAAT
ACTCCGTTAA GCCAGTGCCT GCCGAGCATC GTTGCGGTCG ACACGGCACG CTACCACGGT
ATTGGATTGC GCGACCTGTG CAACCAGTTG CATCAACGCT ATCGCGTCAA TGCCACGGCC
AAGCAACTCA AAGGGTTGTT CAGTCGCTTG CCGGAAGTGG CGCTCAGCCC GGCCCGGGCC
TATGACCATA TGGTGCGCGG TGAGGTGGAA GCGGTGCCGA TCGAGGCATT GCTCGGCCGC
GTCGCGGCAG TCATGCTGGT GCCATACCCG CCCGGCATAC CTTTGATCAT GCCGGGGGAG
CGGTTCACTG AAGCAACCCG CTCGATCCTC GACTACCTGG TGTTTGCCCG CGCCTTCAAC
AGCGGTTTTC CCGGTTTCGT CGCCGATGTG CACGGCCTGC AGAACGAAAG CGGAAACTAT
ACGGTCGATT GCGTCAAGGA ATACGAATGA
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| Protein sequence | MYKDLKFPIL IVHRAIKADS VAGERVRGIA EELRQDGFAI LAAADNAEAR LVAATHHGLA
CMLIAAEGVG ENTHLLQNMA ELVRLARQRA PNLPIFALGE QVTLENAPAE AMSELNQLRG
ILYLFEDTVP FLARQVARAA HNYLDGLLPP FFKALVQHTA QSNYSWHTPG HGGGVAYRKS
PVGQAFHQFF GENTLRSDLS VSVPELGSLL DHTGPLAAAE ARAARNFGAD HTFFVINGTS
TANKIVWHAM VGRDDLVLVD RNCHKSVVHA IIMTGAIPIY LCPERNELGI IGPIPLSEFS
AESIQAKVRA NPLAKGREPR IKLAVVTNST YDGLCYHAGL IKQALGSSAE VLHFDEAWFA
YAAFHEFFTG RYAMGTACTE DSPLVFSTHS THKLLAAFSQ ASMIHVQDGA QRQLDRGRFN
EAFMMHISTS PQYSILASLD VASTMMEGHA GRSLLQEMFD EALSFRRALA NLRAHIAATD
WWFSIWQPPG AEGIDQLAAQ DWLLQPGAQW HGFGELAGDY VLLDPLKVTL VMPGLRADGV
LDEQGIPAAV VSKFLWERGL VVEKTGLYSF LVLFSMGITK GKWSTLLTEL LEFKRHYDGN
TPLSQCLPSI VAVDTARYHG IGLRDLCNQL HQRYRVNATA KQLKGLFSRL PEVALSPARA
YDHMVRGEVE AVPIEALLGR VAAVMLVPYP PGIPLIMPGE RFTEATRSIL DYLVFARAFN
SGFPGFVADV HGLQNESGNY TVDCVKEYE
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