| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_3255 |
|---|
| Symbol | |
|---|
| ID | 6112207 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida W619 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010501 |
|---|
| Strand | - |
|---|
| Start bp | 3594440 |
|---|
| End bp | 3597094 |
|---|
| Gene Length | 2655 bp |
|---|
| Protein Length | 884 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 641623040 |
|---|
| Product | type VI secretion ATPase |
|---|
| Protein accession | YP_001750112 |
|---|
| Protein GI | 170722424 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0542] ATPases with chaperone activity, ATP-binding subunit |
|---|
| TIGRFAM ID | [TIGR03345] type VI secretion ATPase, ClpV1 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 45 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCACACG ATCCTGCACG TTTGCTTCGC CGGCTCAACT CATATTGTAC CCAGGCACTC
ACGGCAGCGG CATCTTTATG CCAGACACGT GGGCACAGTC ATATCACTGT TGAACATTGG
CTGTTGAAAT TGTTTGAACA AGGTGAGGGC GATCTCGTGG TCATCGCCCG CCGATATGAG
TGGGATATAG ATGCCATCTG GCAGGGACTG CTTGACCACT TCAATACATT GCCGCGCAGC
GTTCTCGGCA AACCTCAGTT GAGCAGTGAG GTGCAGCAGC TGATCACCAA TGCCTGGTTG
TTGGCATCGT TGGATCGTGA CTGTGGACAA TTGCGGTCCA TTCACTTGCT GTGGGCGCTA
TTTGAAGCGC CAAACTTGCT TAAGTGTTCA GCCGCTTGGC CTCTGTTGAG CATCGGTCCT
ACGCAATCGG AGCAAGTGAA AACGCTGCTT GAATTCGATT CGGAAGAACG TCAATCAGAG
CAGAATTCAT TGTTTAAGCC AGAAGTGCCA GAAGAGGCTA AGGCTGTGGT CGGCACAGGA
GGTGATTCGG CACTGCTCGC TATCTTGGAT CAGTTCAGCC ATGACGTTAC TGCAAAGGCT
GCAGCAGGGC AGATTGACCC GGTGTTCGGC CGTGACGATG AAATCCGCCA GGTGATCGAT
GTACTGAGCC GTCGGCGCAA GAACAACCCC ATTCTGGTAG GCGACCCGGG TGTCGGAAAA
ACCGCACTGG TCGAGGGGCT GGCTTTACGC ATCGCCAGCG GCGATGTGCC CGATAGCTTG
AAACCCGTGT GTATCCGTAC GCTGGACCTG GGGTTGCTCC AGGCGGGCGC AGGGGTCAAA
GGCGAGTTCG AGCAACGGCT GAAGAACGTA ATTGAGGCCG TCCAGCGGTC AGAGACGCCG
GTGCTGCTGT TCATCGATGA AGCGCACACC TTGATCGGTG CTGGCAATCA GGCAGGGGGC
GCAGATGCGG CGAATCTGCT GAAACCGGCT CTGGCGCGTG GCGAGCTGCG CACCATCGCT
GCCACCACTT GGAGTGAATA CAAGCAGTAC TTCGAGCGCG ATGCGGCGTT AGAGCGTCGC
TTCCAGATGA TCAAGGTCGA TGAGCCGGAT GATGCCAATG CTTGTGTGAT GCTGCGAGGG
CTCAAAGCGC GTTATGCCAG CTACCACGGC GTGCATGTTC AAGACGCTGC GGTGCAGGCG
GCGGTCAGCT TGTCTCGCCG CTTTTTGACC GGGCGCCGTT TACCGGACAA AGCTGTGGAT
CTGATTGATA CCGCCTGCGC GCGTGTTCGC ATGAGCTTGG ACTGCGAACC TCAGGCCTTG
GTCCAGCTGA AGTCGCAGAA AATGGCCTTC ACGGCAGAGA GGGTGGTGCT GGAAGAGGAC
GCGCAGCTTA CCGGTATTAC GGATGAATCT CGCTTGGCGA AGATCACTAC CCAGCTGGTG
CAGCTGGAGA GTCAGCAAGC CGCGTTGGAG CTGCAGTACC AACAAGAACT CGACCTCACC
CACCAGCTGC TCAATGCTCG CCAGGGCGAG CAGGTTGATA CAACTGTCTG CGCTCAGCTG
CAAGAACACC TCAGCTACGT GCAGGGGAGT CGGCCACTGC TGTCCCTCGA TGTGTGCGCA
CGCAGTGTGG CTGAGGTGAT CGCAGACTGG ACGGGCGTGC CTCTCGGTAG TCTGCTGAAA
GACGAACACG CCAGCTTGTT GAACCTGGAA GATCAGTTGG CCGAGCGTGT TGTTGGCCAA
GACCCGGCGC TGGTTGCTCT TGCCCAACGG TTGCGCGCCG CCCGAACGGG CCTCACTGAC
GACAAGGCAT CGATGGTTGT CTTCCTGCTG GTCGGTACCA GTGGCATCGG CAAGACGGAG
ACGGCGCATG CACTGGCCCA CAGTCTGTTC GGTGGCGAGA AATCCTTGAT CACCCTCAAC
ATGTCGGAGT ATCAAGAGGC GCACACCGTC AGCCAACTCA AGGGTTCGCC GCCGGGTTAT
GTGGGTTACG GCCAGGGTGG CGTACTCACC GAAGCCGTTC GCCAGCGCCC TTATAGCGTG
GTGTTGCTGG ACGAAGTCGA AAAGGCCCAC CGTGATGTGC TCAACCTGTT CTATCAGGTG
TTCGACCGCG GCTTCATGCG TGATGGAGAA GGAAGGGAGA TCGATTTTCG CAACACGGTC
ATCCTCATGA CTTCGAACCT GGGAAGCGAT CTGCTGCAAG GTAGTATCGA GCGGCAGCCA
GGCATTGAGG AAGCGGCACT GCATGAGATA TTGCGTCCCG TGTTACGCGA GCACTTCCAT
GCTGCACTGT TGGCTCGTTT CCAGACATTG ATCTTCCGCC CATTGGGGCC CGATGCACTC
AAGCGCATTG TCGCCATCAA ACTCGATCAA GTGGCCAAGC GCTTGCTGCG TCATTACGGC
CTGCAATGTG AGGTTGATGA CTCGCTCTAC GAAGCGCTGG TCGCCGCCTG CCTTTTGCCC
GATACCGGCG CTCGCAATAT CGATAGCTTG CTCAATCAAC AGATCCTGCC GGTGCTCAGC
CAGCAGTTGC TGCAGCGCCA AGCCCTCGGC CAGCCAACAC AAGCCGTGAC GCTCGGGTAC
TGCGAAGACG CTGGTATCAG TTTGAGCTTT GCAGATGAAC ACCACGCAGC CGCGGTGGCT
GCCGAGGGGG TTTGA
|
|---|
| Protein sequence | MAHDPARLLR RLNSYCTQAL TAAASLCQTR GHSHITVEHW LLKLFEQGEG DLVVIARRYE
WDIDAIWQGL LDHFNTLPRS VLGKPQLSSE VQQLITNAWL LASLDRDCGQ LRSIHLLWAL
FEAPNLLKCS AAWPLLSIGP TQSEQVKTLL EFDSEERQSE QNSLFKPEVP EEAKAVVGTG
GDSALLAILD QFSHDVTAKA AAGQIDPVFG RDDEIRQVID VLSRRRKNNP ILVGDPGVGK
TALVEGLALR IASGDVPDSL KPVCIRTLDL GLLQAGAGVK GEFEQRLKNV IEAVQRSETP
VLLFIDEAHT LIGAGNQAGG ADAANLLKPA LARGELRTIA ATTWSEYKQY FERDAALERR
FQMIKVDEPD DANACVMLRG LKARYASYHG VHVQDAAVQA AVSLSRRFLT GRRLPDKAVD
LIDTACARVR MSLDCEPQAL VQLKSQKMAF TAERVVLEED AQLTGITDES RLAKITTQLV
QLESQQAALE LQYQQELDLT HQLLNARQGE QVDTTVCAQL QEHLSYVQGS RPLLSLDVCA
RSVAEVIADW TGVPLGSLLK DEHASLLNLE DQLAERVVGQ DPALVALAQR LRAARTGLTD
DKASMVVFLL VGTSGIGKTE TAHALAHSLF GGEKSLITLN MSEYQEAHTV SQLKGSPPGY
VGYGQGGVLT EAVRQRPYSV VLLDEVEKAH RDVLNLFYQV FDRGFMRDGE GREIDFRNTV
ILMTSNLGSD LLQGSIERQP GIEEAALHEI LRPVLREHFH AALLARFQTL IFRPLGPDAL
KRIVAIKLDQ VAKRLLRHYG LQCEVDDSLY EALVAACLLP DTGARNIDSL LNQQILPVLS
QQLLQRQALG QPTQAVTLGY CEDAGISLSF ADEHHAAAVA AEGV
|
|---|
| |