| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_2517 |
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| Symbol | |
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| ID | 6111470 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | + |
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| Start bp | 2798673 |
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| End bp | 2800523 |
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| Gene Length | 1851 bp |
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| Protein Length | 616 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 641622312 |
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| Product | type VI secretion system Vgr family protein |
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| Protein accession | YP_001749386 |
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| Protein GI | 170721698 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTACGG ACGCCCTCGA GTCGATGCTC ACGCAGAATA AACGCCTGTT CACTTTCGAC
TCACCTTTGC CTCCCGAACA AGAGCTTCAA CTGCTTAGCT TCAGCGGCCG CGAGGCGATT
TCGGAACTGT TCAGCTTCCA GGCAGAACTC ATCTCCCAGG ATGCTCGGAT CGAGCTCAAG
AAACTCATTG GCAAGAAGGT AACTGTAGGC ATCGCGCTGG CCGATGGGAG CACCAGATAC
CTCAGTGCGC ATGTTTCTGA CTTCGTGCAT ACCGGTGCCG ATGGGGGCGT TGCTAACTAC
AGCGCAGAGC TCGTGCCGTG GATCTGGATC CTCAGCCGTC GCCGTGATTC GCGCATCTTC
CAAGACAAGA CCACCGAGCA GATCGTCAAG GAAGTCTTCG ATTACTACCT GACCTTGGCC
GACCACGAAT TCCGCCTGAG CCAACCGCTC AAACCGATCA GCTACTGTAC GCAGTATCAG
GAATCTGACC TGAATTTCGT GCTGCGTATG CTTGAGCAGG AAGGGCTGTT CTTCACCTTC
GAGCATTCTA AGGAAGGTCA TCGCATGATT ATCAGCGATG ACAGCAGCAT TCTTCCGCAG
CTGGAGCGTC AGCCACTGAT CCGTTACCAC AGTGCTTCGG TCACCGAAAC TGCAGATTCG
ATCACCGCCT GGTCTTCGGC GCGGCGGATG CAGCCAACGC GCTTGGCTCT AAAGTCGTTC
GACTACAAGC AGCCTGCCAA CCCGCATTTG GTACAGCTCA ATTCCGTCAA CCAGCAGGGC
GAGGTCGGCC AGTACGAAGT CTTCGAATAC GAAGGCCTTT ACGGTTACGC CGATTCAGAT
GAGGGCCTGC GCAAGGCTCG GCGTCGGCTG GAGGCAATAG AGGTGGACGG CAAGACATTC
CATGGCAAGA GCAATTGCCG CGCCATGGAG CCGGGTCGTT ACTTCGAGCT TAGCCAGCAT
TACGATCACG ACAACGACAC TCCGGACGAT CGCCAGTTTC TTCTGCTGTC CGTCACTCAC
TGGGGGCGTA ACAATTACGC CAATGACGGT GAAGCAGGGT ATGGGAACAG CTTTACCTGT
ATCCGTCGCA AAATTCCGTT CCGCCCCTCA TTGAGCACGC CTAGGGCAGG CATCTCCGGG
CCCCAAACAG CCATTGTCGT CGGCCCGCCG GGCGAAGAGA TCTACACCGA CGAACTGGGC
CGAGTGAAAT TGCAGTTCCA CTGGGACCGC AACGGCGAGT TCAACGACCA GAGTTCCTGC
TGGGTACGCG TCGCCCAGTC CGGTGCCAGC GGCGGCTTCG GCAGCATTTT GATCCCCCGC
GTCGGCGACG AAGTGGTGGT GGTGTTCCTC GACGGCAACC CCGACCGCCC GCTGATCATG
GGCAGCCTGT ACAACAGCAG CAACACCCCG CCCTGGTCGT TGCCGGCGAA CAAGACCCAG
AGTGGCTTCC TGACCCGCTC GATGAAAGGC GACGGCGGTA CCGCGAACTT CTTCCGCTTC
GAAGACAAGG CCGGCGCCGA GCAGATCATC ATGCACGCCG AGCGCAACAT GGACACCGAG
ATCGAGCTGG ATGAGACCCA TGATGTGGGG AACAACCGGA CGATCACGGT GGGGGGCGCG
CACACCGAGA TCATCAAGAA AGATACGGTA GTGAATGTTC AGGAAGGTGG CTACACCCTG
CAGGTGGATA ACAAGTTCGT TCAGGTGAGC GCCAAAGAAC GCATATTGCT TCAGGTCGGG
GGCAGCAAGA TCGCGATTAC ACCCGAAGGC ATCACCATCG AAGCCGACAA GATCGACATC
CTTGGTAAAA ACACCTTCGT CAAAGGTGAC CGTGTCGATA TCAACGAGTA A
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| Protein sequence | MITDALESML TQNKRLFTFD SPLPPEQELQ LLSFSGREAI SELFSFQAEL ISQDARIELK
KLIGKKVTVG IALADGSTRY LSAHVSDFVH TGADGGVANY SAELVPWIWI LSRRRDSRIF
QDKTTEQIVK EVFDYYLTLA DHEFRLSQPL KPISYCTQYQ ESDLNFVLRM LEQEGLFFTF
EHSKEGHRMI ISDDSSILPQ LERQPLIRYH SASVTETADS ITAWSSARRM QPTRLALKSF
DYKQPANPHL VQLNSVNQQG EVGQYEVFEY EGLYGYADSD EGLRKARRRL EAIEVDGKTF
HGKSNCRAME PGRYFELSQH YDHDNDTPDD RQFLLLSVTH WGRNNYANDG EAGYGNSFTC
IRRKIPFRPS LSTPRAGISG PQTAIVVGPP GEEIYTDELG RVKLQFHWDR NGEFNDQSSC
WVRVAQSGAS GGFGSILIPR VGDEVVVVFL DGNPDRPLIM GSLYNSSNTP PWSLPANKTQ
SGFLTRSMKG DGGTANFFRF EDKAGAEQII MHAERNMDTE IELDETHDVG NNRTITVGGA
HTEIIKKDTV VNVQEGGYTL QVDNKFVQVS AKERILLQVG GSKIAITPEG ITIEADKIDI
LGKNTFVKGD RVDINE
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