Gene PputW619_2508 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputW619_2508 
Symbol 
ID6111461 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida W619 
KingdomBacteria 
Replicon accessionNC_010501 
Strand
Start bp2789573 
End bp2790055 
Gene Length483 bp 
Protein Length160 aa 
Translation table11 
GC content64% 
IMG OID641622303 
Producttype VI secretion system lysozyme-related protein 
Protein accessionYP_001749377 
Protein GI170721689 
COG category[S] Function unknown 
COG ID[COG3518] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR03357] type VI secretion system lysozyme-related protein 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.0785456 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTAATC AGGCCCGCCT GCTGCCCTCG CTGCTCGACC GGCTGCTGGA CGACCGTCCG 
TTTCAGTCGG CCGAGCCGGC TGTGCAGCGC ACCTGCTCGC TGGCCGAATA CAAGGCCAGC
ATCGTGCGCG ACCTGGAGGT GCTGGTGAAT ACCCGCCAGT CCCTGGTCGC CGAGCAGATC
GAAGGTTTCA GCCAGCTCGG TGGCTCCATC CTTGAATACG GCATGCCCGA CTTCATCAGC
CGCAGCGTGC TCGACCCGCA CGACCGGCGG CTGATCCAGC AACAGCTGGA GCGCGCGATC
AGTACCGGCG ACCGGCGTTT TCGCCGGGTG CGCGTACAGC TGCTGGCCCA GCAGAACGGC
CATCGCATGT TGACCTTCCG CGTGGACGCC GTGTTGCGTC TGCAGGACAT CAGCCGCCAG
GTGTCGTTTG ACGCCGTGCT GCAGGTCAAC ACCCAGGAAT ACAAAGTGCA GAACCTCAAC
TGA
 
Protein sequence
MSNQARLLPS LLDRLLDDRP FQSAEPAVQR TCSLAEYKAS IVRDLEVLVN TRQSLVAEQI 
EGFSQLGGSI LEYGMPDFIS RSVLDPHDRR LIQQQLERAI STGDRRFRRV RVQLLAQQNG
HRMLTFRVDA VLRLQDISRQ VSFDAVLQVN TQEYKVQNLN