Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputW619_2507 |
Symbol | |
ID | 6111460 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida W619 |
Kingdom | Bacteria |
Replicon accession | NC_010501 |
Strand | - |
Start bp | 2787753 |
End bp | 2789573 |
Gene Length | 1821 bp |
Protein Length | 606 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 641622302 |
Product | type VI secretion protein |
Protein accession | YP_001749376 |
Protein GI | 170721688 |
COG category | [S] Function unknown |
COG ID | [COG3519] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03359] type VI secretion protein, VC_A0110 family |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0116993 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTCGACG AACTGCTGCC CTACTACGAA AAGGAACTGT CGCACCTGCG CTTCCTCGGC CAGGAGTTTG CTGCGCAGTA CCCGAAAATC GCCTCGCGGC TGCTGATCGA GGGCGACAAC TGTGAGGACC CGCATACCGA GCGCCTGATC GAGGCGTTCT CGTTCCTCTC GGCGCGGGTG CACAAAAAGC TCGATGACGA GTTCCCGGAG ATTGTCGAGT CGTTCCTTGA GGTGCTGTAC CCGCACTACC TGCGCCCTAC CCCGTCGATG TCGATCGCCG AGCTTAGCCT TGGCAAGCAG GAGAAGGTCA CCGAAGCCTA CCGCGTGGCG CGGCACACCG AGATGCATGC CAATGCCGTT GAAGGCGTGG TTTGCAAGTT CCGCACCTGC TACCCGGTGG AGCTGTGGCC GGTTGCCGTG CAGCAGGCCT CGTTCACCGA GATGGAACGC TCGGCCTTCA ACGGCCACAG CGCCGATCTG GTGGCGCGCT TGCGCATCCG CCTGCAAGCC ACCGGCGACG TCTTGTTCGG CCAGATGGAG CTTGACCGCC TGCGCTTCTT CCTCGACGGC GAAGCAACGC TGATGCACCA GCTCTACGAG CTGCTGTTCA ACAACCTCGC CAAGGCCACA CTCAGCTTCC AGGACGAAGG CCGCAGCCGT GAAGTCGCAC TGCCCGCCGG CGCCCTGAAA GCGGTGGGTT ATGCCCGCGA CGAAGGTCTG GTGGATTACT CCGAGCGCTC GTTCCTCGGT TACCGCCTGC TGCACGAGTA CTTCACGTTC CCCGACAAAT TCATGTTCTT CGACCTCTCA GGTTTTGCCC GCATCCTGCA GGGCAAGGCC ATCGAGCAGG TCGAGATCAA CTTCTACTTC AACGATTACG ACCTCAGCGA GCGCCTGGCG CGGCTGGCCC AGAACATCGG GCGCAACAAT TTCAAGCTCA ACTGCACGCC GATCATCAAC CTGTTCCGCC AGCAGGCCGA GCCGATCAAG CTCACCCACA CCCAGCACGA ATACCCGGTC ACCCCGGACA TTCGCCTGCA CAACGCGGCG GAAGTGGTGT CGATCGACCG GGTGCGGCGC GTACGCAAGC TCGGTGGCAT CGACCACGTC GGCACCTGCC AGCCGTTCTT CGAGCCGCGT GGCGAGCAAG ACCCGCACAA CAGCTTCTGG ATTGCCCGCC GGCGCAACCA GGGCGATGCC ACGGCGATGA GCATCCGCGT GGTCGACCGC GACCTGGAGC TGATCGACGG CACCAGCGAC ACCCTGAGCA TCAGCCTGAC CTGCAGCAAC CGTGATGTAC CCCTGCTGCT GCCGTTCGGT GGCGAGCGCG GTGATTTCAA CATCCCGGCC AACTCGGTGA TCAAAGACAT CCGCTGCCTG CGCAAGCCCA CCGCCACGGT GCGCGTCCCG CTGGGCAAAG GCCTGATCTG GCGGCTGATC GCGCACCTGT CGCTCAACCA CCTGTCGCTG GTGAGCCAGG GCCGCGAAGT GCTGCTCGAG CTGCTGTCGC TTTACAACTA CCGCAACGTC TCGGCCATCC GCAAACAGAT CAACGGCATC AAGGCAATCA GCAGCGAGCC GGTGGTAGCG CGCATCGGCC ACCCGCGGCC GAATTTCGTG CGCGGCGTGG GCATCACCCT GACCTTCGAC GAAAGCCAGT TCACCGGTAG CGGCGTGTTC CTGTTCGGCA TGGTGCTGGA CCACTTCTTT GGCCAGTACT GCTCGATGAA CAGCTTCACC CAACTGACCC TGCGTACCCA ACAACGAGAA AAGAGAGTCG TCCAATGGCC AGCACGTACT GGCGATCAGC CCCTGGTCTG A
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Protein sequence | MLDELLPYYE KELSHLRFLG QEFAAQYPKI ASRLLIEGDN CEDPHTERLI EAFSFLSARV HKKLDDEFPE IVESFLEVLY PHYLRPTPSM SIAELSLGKQ EKVTEAYRVA RHTEMHANAV EGVVCKFRTC YPVELWPVAV QQASFTEMER SAFNGHSADL VARLRIRLQA TGDVLFGQME LDRLRFFLDG EATLMHQLYE LLFNNLAKAT LSFQDEGRSR EVALPAGALK AVGYARDEGL VDYSERSFLG YRLLHEYFTF PDKFMFFDLS GFARILQGKA IEQVEINFYF NDYDLSERLA RLAQNIGRNN FKLNCTPIIN LFRQQAEPIK LTHTQHEYPV TPDIRLHNAA EVVSIDRVRR VRKLGGIDHV GTCQPFFEPR GEQDPHNSFW IARRRNQGDA TAMSIRVVDR DLELIDGTSD TLSISLTCSN RDVPLLLPFG GERGDFNIPA NSVIKDIRCL RKPTATVRVP LGKGLIWRLI AHLSLNHLSL VSQGREVLLE LLSLYNYRNV SAIRKQINGI KAISSEPVVA RIGHPRPNFV RGVGITLTFD ESQFTGSGVF LFGMVLDHFF GQYCSMNSFT QLTLRTQQRE KRVVQWPART GDQPLV
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