Gene PputW619_2446 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputW619_2446 
Symbol 
ID6111399 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida W619 
KingdomBacteria 
Replicon accessionNC_010501 
Strand
Start bp2717432 
End bp2718847 
Gene Length1416 bp 
Protein Length471 aa 
Translation table11 
GC content67% 
IMG OID641622241 
ProductRND efflux system outer membrane lipoprotein 
Protein accessionYP_001749315 
Protein GI170721627 
COG category[U] Intracellular trafficking, secretion, and vesicular transport
[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1538] Outer membrane protein 
TIGRFAM ID[TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.177234 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones42 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGCTGC TCAAACCCCT GACCCCGAGC CTGCTGGCAC TGGCCCTGGC GGCCTGCGCG 
GTAGGCCCGG ACTACAAAGC GCCGGACACT GAGCCTGCGC GTTTGGCCAG CGACGTGCAG
GCCAAGGCCT TCGACCGTAG CCGCTTCGAA AGCGTGTGGT GGAAGCAGTT CGATGACCCG
GTACTGAACC AGTTGGTGCA GGCTTCGCTG GACGGCAACC GCGACCTGCG CGTGGCCTTT
GCACGGCTCA AGTCGGCGCG GGCGATCCGC GATGATGCCG CCAATGACCA GTTGCCGGTG
GTCACCAGCC GCGCCAGCAG TGAGATCGGC AAGGGCCAGG TACCCGGCCA GACCGATCAA
CGGGTCAACA GCGAGCGTTA CGACCTGGGC CTGGACATGG CCTGGGAGCT CGACCTGTTC
GGCCGTATCC AGCGCCAGAT CGAAGCCAGC GACGCTCAGG CAGCTGCCGC CCAGGCCGAC
CTGCAGCAGT TGCAGGTCAG CCTGATCGCT GAACTGGTCG ATGCCTATGG CCAGCTGCGG
GGTGCACAAC TGCGCGAGAA GATCGCCGTG GCCAACCTCA AGACCCAGCA GGAATCGCGC
AGCATCACGG TGACCCTGCG CGACGCCGGG GTCGGCAACG AGCTCGATGT GGTGCGCGCT
GACGCCCGCC TGGCCGGGGT CGAAGCCACA GTGCCGCAAC TGCAGGCCGA GCAGGCACGG
GCTCGCCACC GCATTGCCAC CCTGCTCGGC CAGCGCCCGG ATGCCCTGAG CGTGGACCTC
TCGCCCAAGG CCTTGCCGGC TATCGCCAAG GCCCTGCCGG TAGGCGACCC GGGTGAACTG
CTGCGCCGCC GCCCAGATAT CCGCAGTGCC GAGCGCCAAC TCGCCGCAGC CACCGCCAAT
GTGGGCGTGG CGACTGCCGA CCTGTTCCCG CGGGTAAGCC TGAGCGGCTT TTTAGGCTTT
ACCGCGGCGC GCGGTTCGCA GATCGGCTCG TCGGCAGCCA ACGCCTGGGG GCTGGGGCCA
AGCATCACTT GGGCTGCGTT CGATCTGGGT AGCGTGCGCG CCCGCCTGCG CGGTGCCAAA
GCCGATGCAG AGGGTGCCTT GGCCAATTAT GAACAGCAGG TATTACTGGC CCTGGAAGAG
TCGGCCAATG CCTTCAGCGA CTATGACAAG ACCCAGCAGC GGCTGCTGTC GCTGATGCGT
CAGAGCGATG CCAGCCGCAA GGCGGCAGAT CTGGCCTCGG TGCGCTACCG CGAAGGTACG
GTGGATTATC TGGTGCTGCT CGATGCCGAG CGTGAGCGGC TGAGCGCCGA AGATGCACAG
GCGCAGGGTG AGGTTGACCT GTATCGCGGC ATTGTCTCGA TCTACAAGGC GCTGGGCGGC
GGCTGGCAGC CGGACTCGGT GGCCAGCGTG CGCTGA
 
Protein sequence
MKLLKPLTPS LLALALAACA VGPDYKAPDT EPARLASDVQ AKAFDRSRFE SVWWKQFDDP 
VLNQLVQASL DGNRDLRVAF ARLKSARAIR DDAANDQLPV VTSRASSEIG KGQVPGQTDQ
RVNSERYDLG LDMAWELDLF GRIQRQIEAS DAQAAAAQAD LQQLQVSLIA ELVDAYGQLR
GAQLREKIAV ANLKTQQESR SITVTLRDAG VGNELDVVRA DARLAGVEAT VPQLQAEQAR
ARHRIATLLG QRPDALSVDL SPKALPAIAK ALPVGDPGEL LRRRPDIRSA ERQLAAATAN
VGVATADLFP RVSLSGFLGF TAARGSQIGS SAANAWGLGP SITWAAFDLG SVRARLRGAK
ADAEGALANY EQQVLLALEE SANAFSDYDK TQQRLLSLMR QSDASRKAAD LASVRYREGT
VDYLVLLDAE RERLSAEDAQ AQGEVDLYRG IVSIYKALGG GWQPDSVASV R