Gene PputW619_2231 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputW619_2231 
Symbol 
ID6111184 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida W619 
KingdomBacteria 
Replicon accessionNC_010501 
Strand
Start bp2479167 
End bp2481266 
Gene Length2100 bp 
Protein Length699 aa 
Translation table11 
GC content64% 
IMG OID641622026 
Productdiguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 
Protein accessionYP_001749100 
Protein GI170721412 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGCTAG TCGCAAGCCC CGACGTCATG TACCGGCTGT TGATCCAGAG CGTGGTGGAC 
TATGCCATCT ACCTGCTCAC CCCCGACGGT ATCGTCGCCA ACTGGAACCC GGGCGCCCAG
CGGGCCAAGG GTTACCTTGC CGACGAGATT ATCGGCAAGC ACTACTCGCT GTTCTACAGC
GAAGCCGAGC GCGTCGCCGG CCTGCCCGAG CAGAACCTTG CGCAGGCGCG CGACACTGGC
CGCTTCGAAG AAATCGGCGC ACGCCTGCGC AAGGACGGCT CGACCTTTCA TGCCCACGTG
GTGATCGAGG CGGTGCGCGA TGACAACGGC CATCTGATCG GCTTCGCCAA GGTCACCCGT
GACATTTCCG AGCGGCGCCA ACAGGAACTG GAATTGTTGC AGGCCAAGGA GCTGGCTGAA
CAGTACAGCC AGGAGATGAC CAAGCTTTCG CAGTTCCTTG ATTCTGTGAT CGCCAACATT
CCCGCCAGCG TTATCGTCCA GGACCTGGAA AGCCAGCGTA TCCTGCTGGC CAACCAGCAG
GCCGAACGCC TGTTCGGTGG GCGCGGCCGC AGCATGATCG GCCGGTTGCC GGGTGAGTGC
CTGGCACCGG CTGCGGCCGA TTACCTGGAA CAGCAACTCG CCCGCGGCGC ACGCAACCCA
AAGGGTTATG CCGCTGAAAC CTGCGTCGAT ACCGCCTGTG GTCCGCGGAC CCTGCGCAGC
CGCGCATTGC TCAGCCAGAA CCGCGAGGGC CAGGCCGACT ATGTGCTGTT CGTGGCAGAA
GACGCCACCG AGGAACTGGC CGCCCACGCC CAGATCCATC ACATGGCGCA CCACGACGCG
CTGACCGGGT TGCCCAACCG CACACTGTTC AACGAGCGGC TCAAGCAGGC ACTGGTGCGC
GGCCATCAGA ACGACAAGCT GACCGCAGCG CTGTGCCTGG ACCTGGACAA CTTCAAGAAC
ATCAACGATT CCCTCGGCCA TGCCTTCGGC GACAAGCTGC TGCGCGCACT GGGCAAGCGC
CTGCGCCGTG AGCTGCGCGA GCAAGACACC CTGGCCCGCT TGGGCGGCGA TGAGTTCGCC
GTGGTGCTGA CTGGCCTGGA CGGCCGCGAG GCTGCCTGCA ATACGGCGAA GCGCCTGATT
GAAGCGATTT GCCCGCCGTT CCAGATCGAA GGCCACCAGT TCACGGTGGG CGTGAGCATC
GGCATCGCCA TTGCCCCCGA TGACAATGAA CAGGCCGAAC AGCTGCTCGG TTACGCCGAT
ATGGCCCTCT ACGAAGCCAA GCGCAATGGG CGTAACCGCT ACGAGTGCTT CCACGTCGAA
CTGGATGTCG CCGCCCGCCA GCGCCGCCTG GTCGAAACAG ACCTGCGCAC TGCGCTGCAC
CTTGGGCAGT TGCACCTGCA TTACCAGCCG ATAGTGGATC AGCAGACCAG CAGCGTGACT
GGCTACGAGG CGCTGTTGCG CTGGGAGCAC CCGACCCGCG GCATGGTGAT GCCCATGGAC
TTCATTCCCA TTGCCGAGGA GACCGGGCTG ATCCACGAAC TCGGCACCCG TGCGCTGAAC
CTGGCGTGCC AGGAGGCGGC CAGTTGGGAC AGTGAGCAGA CGGTGTCGGT CAACCTGTCA
CCGGTGCAGT TCAAGAACGC CAACCTGGTC CATACCGTGG CCCTGGCCCT GGCCGACTCG
GGCCTGGCGC CCCAACGCCT GGAGCTGGAA ATCACCGAAT CGGTACTGCT GGGCAACAGC
GAGGAGAACG TGCGTACCTT GCGCGCCCTG AAAGACCTGG GGGTGTCGAT TTCGCTGGAT
GACTTCGGCA CCGGGTATTC GTCGCTCGGT TACCTGCGCT CGTTCCCGTT CGACCGGATC
AAGATCGACA AGTCGTTCGT GCATGACATG TGCGACAGCC GCGAGGCGAT GTCCATCGTC
CGGGCGATCA CCGAACTGTC CAACAGCCTG ATGATCAAGA CCACGGCTGA GGGTGTGGAG
TCCGAGGAGC AGATGCAGCG GCTGGCGGCG GAAGGGTGCT CGCACTTCCA GGGTTATCTG
TATGGGCGCC CGGTGCCGGC GGGGGAGCGG TTGAAGCAGG TGGCTGTGGC GGTGAGTTGA
 
Protein sequence
MSLVASPDVM YRLLIQSVVD YAIYLLTPDG IVANWNPGAQ RAKGYLADEI IGKHYSLFYS 
EAERVAGLPE QNLAQARDTG RFEEIGARLR KDGSTFHAHV VIEAVRDDNG HLIGFAKVTR
DISERRQQEL ELLQAKELAE QYSQEMTKLS QFLDSVIANI PASVIVQDLE SQRILLANQQ
AERLFGGRGR SMIGRLPGEC LAPAAADYLE QQLARGARNP KGYAAETCVD TACGPRTLRS
RALLSQNREG QADYVLFVAE DATEELAAHA QIHHMAHHDA LTGLPNRTLF NERLKQALVR
GHQNDKLTAA LCLDLDNFKN INDSLGHAFG DKLLRALGKR LRRELREQDT LARLGGDEFA
VVLTGLDGRE AACNTAKRLI EAICPPFQIE GHQFTVGVSI GIAIAPDDNE QAEQLLGYAD
MALYEAKRNG RNRYECFHVE LDVAARQRRL VETDLRTALH LGQLHLHYQP IVDQQTSSVT
GYEALLRWEH PTRGMVMPMD FIPIAEETGL IHELGTRALN LACQEAASWD SEQTVSVNLS
PVQFKNANLV HTVALALADS GLAPQRLELE ITESVLLGNS EENVRTLRAL KDLGVSISLD
DFGTGYSSLG YLRSFPFDRI KIDKSFVHDM CDSREAMSIV RAITELSNSL MIKTTAEGVE
SEEQMQRLAA EGCSHFQGYL YGRPVPAGER LKQVAVAVS