Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputW619_1732 |
Symbol | |
ID | 6110678 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida W619 |
Kingdom | Bacteria |
Replicon accession | NC_010501 |
Strand | - |
Start bp | 1927299 |
End bp | 1929056 |
Gene Length | 1758 bp |
Protein Length | 585 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 641621523 |
Product | Fis family GAF modulated sigma54 specific transcriptional regulator |
Protein accession | YP_001748605 |
Protein GI | 170720917 |
COG category | [K] Transcription [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG3284] Transcriptional activator of acetoin/glycerol metabolism |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 35 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCACCG CCACTTCGAC CCATGCCCAA TTGATCCAGG CCTCCTGGGC GCGCTGCCGA GATCACGGCC TGCAGCCACA AAGCGCCCCC GACTTCGATT GCCTGACCAG GGCCGAACTC AGCGCCCTGC TGGAGCGGCG CCAGGCACTG TTGCAACACA CCCGCGATGC CGTGCTGCCG CAGTACGCGC ACCTGCTGGG CAATGCCAGC TACCTGGTGA TGCTCGCCGA CGCCAGCGGC TGCCTGCTCG AGACCTGGGG ATCGCGACGC TTCGTCTGCC CCCAGCACCA GCACGGTTTC AGTGCCGGCG CCCACTGGCA CGAACGGGGC GTGGGCACCA ATGCGCTGGG CACCGCGCTG GTCTGCGCCG AGCCCGTCCA TGTTGGCCAG GACGAACACT TCCTGCGCCA GAACCGCTAC ATGGCCAGCG CCGCCGCCCC GCTGTACGAT GCCCAGCGGC AACTGGTCGG CGTGCTCGAC GTGGCCAGCG ACGGCTACCT GCCAGCCACC CAGACCCTCG GCCTGGTGCG CATGATGGGC CAGAGCCTGG AGAATCGCCT GATCCTTGCG CAGCATGCCG AGCAGCACGC GCAGTTGCTG TTCAACAGCG CTTGCGACAA CCTCGACAGC CCTTGGGCCG GGCTGCTGGT ATTCGATGAG CGTGGCCAGG TACTCGCCGC CAATCATCGA GCCGACAGCC TGCTGGGCGG CAACCCGCTG CAGCAGAACG TCGAACAACT GTTCCAGATC CCCCTCTACC AGTTGCTTGC CCACCCCCAG CAGCAACCAT TCGCCTTGCA GGCGGCCGGG CGCAACCGGT TCCACTGCCA GTGGCAAGCC CCCTGGCAAA GCACCCCGCG CTCAATGCTT CACAGTGGCG ATCCACGCAT GGAAAAGGCC TTGGGCCAGG CCAGCTTGAT GCTGGAAAAA GACATCCCGC TGCTGGTCCA GGGTGAAACC GGCGTCGGCA AGGAAGTCTT CGTTCAGACC CTGCACCGCG CCAGCAGCCG TGCCCGCCAG CCGTTGATCG CGGTCAACTG TGCGGCGATT CCGGCAGAAC TGGTGGAATC GGAGTTGTTC GGTTATGACA AAGGCGCCTT CACCGGTGCT CATCACAAGG GCAACCCCGG GCTGATCCGC AAGGCCGACA AGGGCGTCCT GTTCCTCGAC GAAATCGGCG ACATGCCGCT GCCGACCCAG GCCCGCCTGC TGCGCGTGCT GCAATCGCGC AGCATTCAGC CACTGGGCAG CGGCGAACCG GTAGCGGTGA ATATCCGCGT AGTCTCGGCA AGCAATCGGG ACCTGGCCGA AGAGGTACGT GCAGGGCGCT TTCGCCAGGA TCTCTACTAC CGCATCGCCG CAATGGCGGT CGTGTTGCCG GCGCTGCGCG AGCGCACTGA CCGGCGAGAA TTGATCGAGC ACATCCACGC ACGGTATCGC GACCCTTACC AACCCCAGCG CTTGGGGCAG CCTATCCTTG AGCTGCTTGA TCGCCACCCC TGGCCGGGCA ATCTGCGCGA GCTGGTGAGT GTGATGCAGG TGGCGCTGGC GTTGGCAGGC GATGGACCGG TCGGCGTCGA ACATCTGCCC GCCGGCTTTC TGGCCGAAGC ACAAGGATGC GCGGTGGTGA GCGACTGTAG TGACGATGAG GCGGACCTGC AAAGCCTGCT GAAACGGGCC AATGGCAACC TCTCGGCCGT GGCGCGTGGC CTGGGGATTA GCCGGACGAC ACTTTACAAA CGCCTGCGCG AGCAATGA
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Protein sequence | MATATSTHAQ LIQASWARCR DHGLQPQSAP DFDCLTRAEL SALLERRQAL LQHTRDAVLP QYAHLLGNAS YLVMLADASG CLLETWGSRR FVCPQHQHGF SAGAHWHERG VGTNALGTAL VCAEPVHVGQ DEHFLRQNRY MASAAAPLYD AQRQLVGVLD VASDGYLPAT QTLGLVRMMG QSLENRLILA QHAEQHAQLL FNSACDNLDS PWAGLLVFDE RGQVLAANHR ADSLLGGNPL QQNVEQLFQI PLYQLLAHPQ QQPFALQAAG RNRFHCQWQA PWQSTPRSML HSGDPRMEKA LGQASLMLEK DIPLLVQGET GVGKEVFVQT LHRASSRARQ PLIAVNCAAI PAELVESELF GYDKGAFTGA HHKGNPGLIR KADKGVLFLD EIGDMPLPTQ ARLLRVLQSR SIQPLGSGEP VAVNIRVVSA SNRDLAEEVR AGRFRQDLYY RIAAMAVVLP ALRERTDRRE LIEHIHARYR DPYQPQRLGQ PILELLDRHP WPGNLRELVS VMQVALALAG DGPVGVEHLP AGFLAEAQGC AVVSDCSDDE ADLQSLLKRA NGNLSAVARG LGISRTTLYK RLREQ
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