| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_1655 |
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| Symbol | |
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| ID | 6110601 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | + |
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| Start bp | 1838871 |
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| End bp | 1841480 |
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| Gene Length | 2610 bp |
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| Protein Length | 869 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 641621447 |
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| Product | DNA topoisomerase I |
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| Protein accession | YP_001748529 |
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| Protein GI | 170720841 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA
[COG0551] Zn-finger domain associated with topoisomerase type I |
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| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.967668 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 0.788315 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGCAAAT CGCTGGTCAT TGTGGAATCC CCGGCCAAGG CCAAGACCAT CAACAAGTAC
CTGGGCAACC AGTACGTGGT GAAGTCGAGT ATCGGCCACA TCCGTGACCT CCCCACCAGC
GGTTCGGCCA GCGCCAGCAA AGAGCCGGCC GCCAAGCGTG GCAAGGCTGC GGGTGAGGCT
CCGGCCCTGT CGCCGAAAGA GAAGGCCCGT CGCCAGCTGG TGGCGCGCAT GGGCGTCGAC
CCCGAGCACG GCTGGAAGGC CAAGTACGAG ATCCTGCCCG GCAAGGAAAA GGTGATCGAA
GAGTTGCGCC GCCTGGCCAA GGATGCTGAC ACCATCTATC TCGCAACCGA CTTGGACCGC
GAAGGGGAAG CCATCGCCTG GCACCTGCGC GAGGCCATCG GTGGCGACGA CGCCCGCTAC
AAGCGCGTGG TGTTCAACGA AATCACCAAA AAGGCCATCC AGGATGCGTT CTCGCAGCCC
GGTGAGCTGG ATATCGACCG TGTCAATGCC CAGCAGGCGC GTCGCTTCCT GGACCGCGTG
GTGGGCTACA TGGTCTCGCC ACTGCTGTGG GCCAAGATCG CCCGTGGCCT GTCTGCGGGG
CGTGTCCAGT CGGTGGCCGT GAAGCTGGTT GTCGAGCGTG AGCGCGAGAT CCGTGCCTTC
ATCCCGGAAG AGTACTGGGA AGTGCACGCC GACCTTGGCA CCGCCAAGGA CGCCAAGGTG
CGTTTCGAGG TAACCCGCGA GAAGGGCGAG GCGTTCAAGC CGCTGAACGA AGCTCAAGCC
ATGGCTGCGC TGAGCAAACT CAAGGCGTCC AGCTACAGTG TGGTCAAGCG TGAAGACCGC
CCGACCAGCA GCAAGCCGTC GGCACCGTTC ATCACGTCCA CCCTGCAACA GGCTGCAAGC
AACCGCCTGG GCTTCGGGGT GAAGAAGACC ATGATGATGG CTCAGCGGCT ATACGAAGCG
GGCTACATCA CCTACATGCG TACCGACTCG ACCAATCTGT CGGTGGACGC GCTGGACATG
GCGCGCAGCT ACATCGAGCG TGAGTTCGGC AAGCAGTACC TGCCTGAGGC ACCGCTGGTG
TACGGCAGCA AAGAAGGCGC TCAGGAGGCC CACGAAGCGA TTCGTCCTTC CGACGTCAAT
ACGCACCCAA CCAAGCTCAG CGGCATGGAG CGTGACGCCG AGCGCTTGTA TGAGCTGATC
TGGCGCCAGT TCCTCGCCTG CCAGATGCCG CCTGCCCAGT ACCTGTCCAC CAGTGTGACC
GTGGCTGCCG GTGACTTCGA GTTGCGCGCC AAAGGCCGCA TCCTCAAGTT CGACGGTTAC
ACCCGTGTGC TGCCTCAGCA GAGCAAGCCG GGCGAAGATG ATGTGTTGCC GGAAATGGTC
CAGGGTGAAG CGCTCAAGCT GATCCAGATC GACCCGAGCC AGCACTTCAC CAAGCCGCCT
GCGCGCTTTA CTGAAGCGAG CCTGGTCAAG GAAATGGAAA AGCGCGGTAT TGGTCGACCG
TCGACCTACG CGGCTATCAT TTCCACCATC CAGGACCGCG GCTACGTAAC ACTGCACAAT
CGTCGCTTCT ACTCCGAGAA GATGGGCGAC ATCGTCACCG AGCGCTTGTC GGAAAGCTTC
GCCAACCTCA TGGACTACGG TTTCACCGCC GGCATGGAGG AAAACCTCGA TGATGTGGCG
CAGGGTGAGC GCGACTGGAA GAACGTGCTG GACGAGTTCT ACGGCGACTT CAGCAAGAAA
CTGCTGACGG CCGAATCAGC CGAAGACGGC ATGCGTGCCA ACCAGCCGAC CATGACCAAC
ATCCCATGCA AGGAATGCGG CCGGCCGATG ATGATTCGGA CTGCTTCTAC TGGCGTGTTC
CTGGGATGCT CGGGTTACAG TCTGCCGCCT AAAGAGCGCT GCAAGGCCAC CGTCAACCTG
GTGCCGGGCG ATGAAATTGC TGCTGACGAC GAAGGTGAAT CGGAGTCGCG CGTGCTATTG
GGCAAGCACC GCTGCCCGAT CTGCGCCACG GCCATGGATG CCTACCTGCT CGACGAGAAG
CACAAGCTGC ATATCTGCGG TAACAACCCC GATTGCGTTG GCTACGAGAT CGAAGAGGGC
AGTTACCGCA TCAAGGGTTA CGAAGGGCCG AGCCTGGAGT GTGACAAGTG CGGTAGCGAG
ATGCAGCTCA AGACCGGCCG GTTCGGCAAG TTCTTCGGTT GCACCAACCC GGCGTGCAAG
AACACCCGCA AGCTGCTCAA GAGCGGCGAG GCGGCGCCAC CGAAGATGGA CAAGGTGGAC
ATGCCAGAGC TCAAGTGCGA GAAGGTCGAC GACACCTATG TGCTGCGTGA CGGTGCTTCT
GGGCTGTTCC TGGCAGCCAG CCAGTTCCCC AAGAATCGCG AGACCCGTGC GCCGCTGGTG
CTGGAGATCG TGCCGCACAA GCATGATATC GACCCCAAGT ACCACTTCCT GTGCGATGCG
CCGCAGAAAG ACCCGGAGGG TCGCCCGGCA GTGATCCGCT ACAGCCGTAA GACCAAAGAG
CAATACGTGC AGTCCGAGGT CGATGGCAAA CCTACCGGGT GGAAGGCGTT CTACGACGGT
AATGCCTGGA AGGTTGAAGA CAAGCGGTGA
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| Protein sequence | MGKSLVIVES PAKAKTINKY LGNQYVVKSS IGHIRDLPTS GSASASKEPA AKRGKAAGEA
PALSPKEKAR RQLVARMGVD PEHGWKAKYE ILPGKEKVIE ELRRLAKDAD TIYLATDLDR
EGEAIAWHLR EAIGGDDARY KRVVFNEITK KAIQDAFSQP GELDIDRVNA QQARRFLDRV
VGYMVSPLLW AKIARGLSAG RVQSVAVKLV VEREREIRAF IPEEYWEVHA DLGTAKDAKV
RFEVTREKGE AFKPLNEAQA MAALSKLKAS SYSVVKREDR PTSSKPSAPF ITSTLQQAAS
NRLGFGVKKT MMMAQRLYEA GYITYMRTDS TNLSVDALDM ARSYIEREFG KQYLPEAPLV
YGSKEGAQEA HEAIRPSDVN THPTKLSGME RDAERLYELI WRQFLACQMP PAQYLSTSVT
VAAGDFELRA KGRILKFDGY TRVLPQQSKP GEDDVLPEMV QGEALKLIQI DPSQHFTKPP
ARFTEASLVK EMEKRGIGRP STYAAIISTI QDRGYVTLHN RRFYSEKMGD IVTERLSESF
ANLMDYGFTA GMEENLDDVA QGERDWKNVL DEFYGDFSKK LLTAESAEDG MRANQPTMTN
IPCKECGRPM MIRTASTGVF LGCSGYSLPP KERCKATVNL VPGDEIAADD EGESESRVLL
GKHRCPICAT AMDAYLLDEK HKLHICGNNP DCVGYEIEEG SYRIKGYEGP SLECDKCGSE
MQLKTGRFGK FFGCTNPACK NTRKLLKSGE AAPPKMDKVD MPELKCEKVD DTYVLRDGAS
GLFLAASQFP KNRETRAPLV LEIVPHKHDI DPKYHFLCDA PQKDPEGRPA VIRYSRKTKE
QYVQSEVDGK PTGWKAFYDG NAWKVEDKR
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