| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_1574 |
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| Symbol | |
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| ID | 6110519 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | + |
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| Start bp | 1739129 |
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| End bp | 1740007 |
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| Gene Length | 879 bp |
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| Protein Length | 292 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641621365 |
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| Product | rhomboid family protein |
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| Protein accession | YP_001748448 |
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| Protein GI | 170720760 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.227659 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATATCG TCGAAGTGAT GCGCCTGCCG CTGTCGGTCG ACCTCAGCGG CTTCGTGCAC
CTGCTGCAAC GCCTGCAGGT GCCGCACCGG GTCAGCGAAG AGGGCGAAGC CCAGGTGCTC
TGGGCGCCGG AAACCATGGC CGCCGATGTC CTTCAACTCT ACCAGCGCTA CCCAGACGGC
AACGCTGATG TCGAGCTTGC GCAGGCCCCT GCGCAAGGCG ACTTGCCGGC GAAAGGGCCG
ACACTGGCCG AGCAGGCAAA AGCCTGCAAG GTCACCGCCG CCGTCCTCTT CCTGTGCCTG
ATCGTCGCCG GCCTTACCCG CCTGGGCGAC AACCTCACCA CCATCAGCTG GTTCACCTTC
CTCGACTACC GCGTCCAGGG TGAATACCTG CATTTCACGC CGCTGGCTCA GGGCCTCGCC
GAAGGCCAAT GGTGGCGCCT GGTGTCGCCG ATGCTGCTGC ACTTTGGCGT ACTGCACCTG
GCCATGAACG GCATGTGGTA CTGGGAACTG GGCAAGCGTA TCGAACTGCG CCAGGGCCCT
TGGTTGCTGG CTGGCCTGAC CTTGCTGTTC AGCCTGGTGT CCAACCTGGC CCAGCACTAC
ACCAGTGGCC CGAGCCTGTT CGGCGGCCTG TCGGGGGTGC TGTACGGCTT GCTCGGCCAT
GTCTGGCTGT ACCAGTGGCT GGCGCCCAAC CCACACTTCA GCCTGCCCAA GGGTGTGCTG
GTGATGATGC TCATCTGGCT GGTCATCTGC CTGACCGGTG TGGTCGGCCA ACTCGGTTTT
GGCCAGATCG CCAACGCCGC GCACGTCGGC GGGCTGCTCA TCGGATGCCT GACGGGCCTC
TTGGGTGGTG CGCTGGCGCG GCGTAAACTG TCCGCTTGA
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| Protein sequence | MNIVEVMRLP LSVDLSGFVH LLQRLQVPHR VSEEGEAQVL WAPETMAADV LQLYQRYPDG
NADVELAQAP AQGDLPAKGP TLAEQAKACK VTAAVLFLCL IVAGLTRLGD NLTTISWFTF
LDYRVQGEYL HFTPLAQGLA EGQWWRLVSP MLLHFGVLHL AMNGMWYWEL GKRIELRQGP
WLLAGLTLLF SLVSNLAQHY TSGPSLFGGL SGVLYGLLGH VWLYQWLAPN PHFSLPKGVL
VMMLIWLVIC LTGVVGQLGF GQIANAAHVG GLLIGCLTGL LGGALARRKL SA
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