| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_1554 |
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| Symbol | |
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| ID | 6110495 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | + |
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| Start bp | 1714551 |
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| End bp | 1717241 |
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| Gene Length | 2691 bp |
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| Protein Length | 896 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641621341 |
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| Product | peptidoglycan-binding LysM |
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| Protein accession | YP_001748428 |
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| Protein GI | 170720740 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3170] Tfp pilus assembly protein FimV |
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| TIGRFAM ID | [TIGR03504] FimV C-terminal domain
[TIGR03505] FimV N-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 0.380472 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTTCGAA TTCGCAAACT GGTTCTGGCC ATGGCGGCAG CGTCGGCGCT GTCATCTGGC
ATGGCGAATG CCCTGGGGTT GGGTGAACTG ACGCTCAAAT CGGCGCAGAA CCAGCCGCTG
GACGCCGAGA TCGAATTGCT CGATGTGCGC GACCTCACCG CTGCCGAAGT GGCGCCAAGC
CTGGCGCCGC CGGAAGAGTT CAGCAAGGCC GGGGTGGAGT ATCCGGGCTA CCTCGAGGAC
CTGACCTTTA CCCCGGTGAT CAACCCCAAT GGCAAGAGCG TACTGCGGGT AACCTCCAGC
CAGCCGCTGC CGGGTTCGGT GGTAAAGTTT CTGGTCCAGG TGATGTGGCC CCAGGGGCGC
CTGCTGCGTG ACTACAGTGT GCTGCTCGAC CAGGCCAAGG CTCAGGGCGA GCAGCCTGCC
GCGGCCAATG TCACCCCGGC AACCAGCAGC GCCGGCAGCT ACACCACCAA ACGCCGCGAT
ACCCTATGGC AGATTGCTGC GCGCAATACC CAAAGTGGTG GCTCGGTGCA GCAGACAATG
ATCGCCATTC AGGCGCTGAA CCCGGATGCC TTTATCGGCA ACAATATCAA CCAGTTGAAG
GTTGGCCAGG TGTTGCGCCT GCCCGATCAG CAGCAGGTCC AGAGCATCCC GCAGGTCGAG
GCCAATCGCG AAGTGGCCGA ACAGTACGCC GCCTGGCGTG AGGGCCGGCG CCTAGGCCCC
CGCGCCCGGC AGCTGGACGC CACCCGTCGC GGCGCCGCCG ACGCGGCGCC TGAGCGTATA
GCCCAAGGCG ATAACCTGCG CCTGGTCAGC CCAGGCAACC AGCCTGGCGC TGGCGATGCC
AAGGCGCTCA ACGACAAGCT GGCCGTGGCC CAGGAGAGCC TGGACACCAG CCGTCGTGAC
AATGAAGAAC TCAAGAGCCG GATGAGTGAC CTGCAGAGCC AGTTGGACAA GCTGCAGCGC
CTCATTCAGC TCAAGAACGA CCAGTTGGCA CGCCTGGAGG CACAGGGTGC CGCCGGGGAA
CCCGCCCCGG CCGCCACCTT GCCTGGTGAG TCGGCCCCGG CGCAGCCTGC AGATAACACC
CAGATGCCGC CCGCCGATCC CGTCGTGGCA CCGGCGCCGG CTGCCGTCGA CACCGCGCCT
GGCTCTGCCC CGGCTGGCGA GGATGCTCCT GTCGGCCAGC AGCCGGGCGC GCTGGATGAG
ATGCTGGGGA ATCCGTTGGT GCTGGGCCTG ATCGCAGGTT CCGCATTCCT CGTGCTGTTG
TTGCTGCTGT TGCTGCTGGC GCGCCGACGC AAAGCCCAGC AGGAGGCCGA AAAGCACCTG
CGCATGGCGC GGGCACTGGC TGAGGAAGGC GAGCGTAACC CCGACCTCGA CCTGCCTGCG
AGCAGCTTCG ATGAGCTGGA AGTATCGGCG CCTGGCGTAA CCCTGTCGCC GGCGGTGGTA
GCGGCTTCGG CTGCTGCAGC CGTTGCGGCG GAAAAACCCG TTGCCCCGGC CCCCGTTGGC
GTGCCATTAC CGGCACAGGA CCCGAATGCC GAGCTGCTGG CAGAGGTCGA GCAGAGCTTG
GCCCGCGGCC GTCTCAATCA CGCGGCGGAC CTATTGGAGA CGGCCGTCGC TGCGCAACCG
GAGCAGGATG GCCTGCGGTT GAAGCTGATG GAGGTTTACG CGCGCCAGGG TGACCACAGC
GCATTCGTAG AGCAGGAGCG CAAGCTGCCG GGCAGCGAAG AGAATATCGC GCAGGTCAGT
CAGCTCAAGG AGCACTACCC GGCCATGCTT GGCATTGCCG CGGCAGGGCT GGGGGCTGCG
GCGCTGGCTG CCGAGCTGGA TGAGCAGTAC GTCCAGGATC TGTTGCAGGA TCAGCCGCAG
GCGCCGGCAG AGGTCGATGC CGAGCCTGAG CCTGAGCCTG AGCCTGAAGC TGTTGCTGAG
TCTGAACCTG AACCTGAGTC GCAAATCGAG GCGGTTGCTC AAGCGCCTGC CCTTGATGAC
AATGGTCTGG ACAGTGCATT CGACCTTGAC CTGAGTGACG ATCTGCCCCT GAGCGAACTT
GAACCGCCGA TGCTCGATGA AGCCGCATTG ACGGATCTGC AGGTAAATGA TGAGCCGCTC
GCCGCCGCTG ATCCTGCTGT GCAGGAAGCA GACGCCGATG CCGATTTCGA AGCCTTGCTG
GCGCAGGCTC AGGCCGAGCC ACAGAGCGTC GATGATCTGG CGGACTTCGA CCTGGACATG
GGTGAGCCGA GCGTTGCCGA ACCGGTCGAG GAAGAGCCGG TCGACGTTGC TGCCGAACTG
GCAGCTTTCG ATTCCATCCC TGAGTTCGAC CCGATTTCCG AGCTGGAGCT GCCAGAAGAC
TTCGATTTGT CGCTGTCGCT GGATGACCAG TCACCGGCCG CCAAGAGCTT TGCTTCGGAG
CTCAGTGACG TCAACGCTGA ACTGGACAAG CTGTCGCAGA ACCTCGAGTC GCCGTCGCTG
GAGTCGCACT TCACTGCTGC AGACGCTGCC CAAGAGCCGG AACCCCTGGA CGATCTGGAC
TTCGATTTCT TCTCCGGCAG CGACGAAGTG GCCACCAAGC TCGATCTGGC ACGTGCCTAC
ATCGACATGG GTGACCATCA GGGGGCGCGT GACATCCTCG ATGAAGTAGT CAAGGATGGC
GACGACACTC AGCGTCAGGA AGCCGAAGAC ATGCTGTCCC GGCTGGTCTG A
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| Protein sequence | MLRIRKLVLA MAAASALSSG MANALGLGEL TLKSAQNQPL DAEIELLDVR DLTAAEVAPS
LAPPEEFSKA GVEYPGYLED LTFTPVINPN GKSVLRVTSS QPLPGSVVKF LVQVMWPQGR
LLRDYSVLLD QAKAQGEQPA AANVTPATSS AGSYTTKRRD TLWQIAARNT QSGGSVQQTM
IAIQALNPDA FIGNNINQLK VGQVLRLPDQ QQVQSIPQVE ANREVAEQYA AWREGRRLGP
RARQLDATRR GAADAAPERI AQGDNLRLVS PGNQPGAGDA KALNDKLAVA QESLDTSRRD
NEELKSRMSD LQSQLDKLQR LIQLKNDQLA RLEAQGAAGE PAPAATLPGE SAPAQPADNT
QMPPADPVVA PAPAAVDTAP GSAPAGEDAP VGQQPGALDE MLGNPLVLGL IAGSAFLVLL
LLLLLLARRR KAQQEAEKHL RMARALAEEG ERNPDLDLPA SSFDELEVSA PGVTLSPAVV
AASAAAAVAA EKPVAPAPVG VPLPAQDPNA ELLAEVEQSL ARGRLNHAAD LLETAVAAQP
EQDGLRLKLM EVYARQGDHS AFVEQERKLP GSEENIAQVS QLKEHYPAML GIAAAGLGAA
ALAAELDEQY VQDLLQDQPQ APAEVDAEPE PEPEPEAVAE SEPEPESQIE AVAQAPALDD
NGLDSAFDLD LSDDLPLSEL EPPMLDEAAL TDLQVNDEPL AAADPAVQEA DADADFEALL
AQAQAEPQSV DDLADFDLDM GEPSVAEPVE EEPVDVAAEL AAFDSIPEFD PISELELPED
FDLSLSLDDQ SPAAKSFASE LSDVNAELDK LSQNLESPSL ESHFTAADAA QEPEPLDDLD
FDFFSGSDEV ATKLDLARAY IDMGDHQGAR DILDEVVKDG DDTQRQEAED MLSRLV
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