Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputW619_1517 |
Symbol | |
ID | 6110451 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida W619 |
Kingdom | Bacteria |
Replicon accession | NC_010501 |
Strand | + |
Start bp | 1675829 |
End bp | 1676830 |
Gene Length | 1002 bp |
Protein Length | 333 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 641621297 |
Product | RluA family pseudouridine synthase |
Protein accession | YP_001748391 |
Protein GI | 170720703 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0000147946 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATTAAGT GCTTCAATTC CATAAAAAAT TGTTATGATC CCTTGATGAC GACCAATACC CCTCCGACTT CCGGCGTTCA GCTGATCGAA GTCGCGCCGG AGCTTGCCGG CCAACGCATC GACAATTTCC TCATCACGGC GCTCAAGGGT GTACCCAGGA CGCTGGTCTA CCGCATCCTG CGCAAAGGCG AGGTCCGGGT CAACAAGGGC CGTGTCAAGC CTGAGTACAA GATCCAGGCG GGTGACATCG TCCGTGTACC GCCTGTGCGC CTCCCGGAGC GTGACGAGCC GGCCCCGGTT GCCCAGGGGC TGCTGCAGCG CCTGGAAGCC GCCATCGTCT ACGAAGACAA GGCGCTGATC GTGATGAACA AGCCGGCCGG TATCGCCGTG CATGGTGGCA GTGGCCTGAG CTTTGGTGTG ATCGAGGCGC TGCGCCAGTT GCGTCCGGAT GCCAAGGAGC TGGAGCTTGT GCACCGCCTG GATCGCGACA CTTCGGGCCT GCTGATGATT GCCAAGAAGC GCAGCATGCT GCGCCATCTG CATGCCGCGC TGCGTGGCGA TGGGGTCGAC AAGCGCTACA TGGCGCTGGT GCGTGGCCAC TGGCCTACCT CGAAGAAGCA GGTCAATGCC CCGTTGCTCA AGAGCAACCT GCGTTCGGGC GAGCGTATGG TCGAGGTGAA TGACGAGGGC AAGGAAGCGC TGACCCTGTT CCGTGTGCTT CGCCGTTTCG GTGAGTTCGC CACCATTGTC GAGGCGCGCC CTATCACTGG GCGTACCCAT CAGATTCGCG TACATACTCT GCATGCTGGC CATATGATCG CCGGTGACAG CAAATACGGC GACGAAGATT TCAGTCGCGA GATTCGAGAC TTGGGAGGCA AGCGCCTGTT CCTGCATGCC TATGCCCTCA CGGTGCCGCT GCCTGATGGT GGTGAGCTCA AGCTCGAGGC GCCTGTGGAC GAAGTTTGGG CGAAAACCGT GGAGCGTCTG GGGGCGTCCT GA
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Protein sequence | MIKCFNSIKN CYDPLMTTNT PPTSGVQLIE VAPELAGQRI DNFLITALKG VPRTLVYRIL RKGEVRVNKG RVKPEYKIQA GDIVRVPPVR LPERDEPAPV AQGLLQRLEA AIVYEDKALI VMNKPAGIAV HGGSGLSFGV IEALRQLRPD AKELELVHRL DRDTSGLLMI AKKRSMLRHL HAALRGDGVD KRYMALVRGH WPTSKKQVNA PLLKSNLRSG ERMVEVNDEG KEALTLFRVL RRFGEFATIV EARPITGRTH QIRVHTLHAG HMIAGDSKYG DEDFSREIRD LGGKRLFLHA YALTVPLPDG GELKLEAPVD EVWAKTVERL GAS
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