| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_1499 |
|---|
| Symbol | |
|---|
| ID | 6110433 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida W619 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010501 |
|---|
| Strand | - |
|---|
| Start bp | 1654546 |
|---|
| End bp | 1657044 |
|---|
| Gene Length | 2499 bp |
|---|
| Protein Length | 832 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641621279 |
|---|
| Product | fimbrial biogenesis outer membrane usher protein |
|---|
| Protein accession | YP_001748373 |
|---|
| Protein GI | 170720685 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3188] P pilus assembly protein, porin PapC |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCCTGC AACCCCCTGG GTGCAGGCGT TTTCGCCTGC GCCTCGTTTG CCCGCTGGCC
ATCTGCCTGT CGACTGGCAC GGCGCTGGCA ACCCCTGCCC CTGCGCTGGG CCCAGAGTTC
GAGGCCAGCT TTCTGTACCT GTCCCCCGGG CAGCCAAGAG CGAACGTTAC CCGCGCCCTG
CATGCGCTGT CCGACCAGAA GGAACTGCCA CCCGGGCGCT ATCCTGTGCA ACTGCTGGTC
AACCTTGGCC CGGCAGGTGT ACGCAAGTTG CAGTTCGAGC TGAGCCCGGA CGGCCGGCAA
TTGGTGCCTT GCCTGGCCCC CAGCCTGATG GCCGAACTGG GCCTGCGCCT GGATGCCATC
GCCGACCCCA CTGCACTCGA CCACGCCTGC CTGGACCTGC CACGCTTGGT ACCAGGGGCA
CTTGTCGACT TCGATGCAAG CCAACTGCGG CTGGCCATTT CCATTCCGCA AATTGCCCTG
CGCCGCGACA TGGCAGGCCA AGTGGACCCG GCGCGTTGGG AGAATGGCAT ATCGGCCGCC
TTCGTCAGCT ACCAGGCCTC CTTGCAACAA AGCGACAGCC GCGGGCGCGG CAGCCAGAAC
ACCCAGGACC TGTACCTGAA CAGCGGTATC AACCTGGCCG GCTGGCGGTT GCGCAGCAAC
CAGTCCTGGC GCCGTGATGG CGAGGGCCGG CAAACCTGGA GCCGTGCGTA CACCTATGCC
CAGCACGATT TGCCGGGCAC CTGGGGCAAC ATCACCCTGG GCGAAACATT CACCAGCAGC
GATGTATTCC GCAGCGTGCC GGTTACCGGC CTACGCCTGG CCTCTGATTT CGACATGTTG
CCCGATGCGA TGCGCAGTTA TGCCCCTACC TTGCGCGGCG TGGCACAGAC ACGTGCAAAA
CTGGAAGTGT GGCAGAACGG CTACCCGATC TACTCAACCT ACGTCAGCCC TGGCCCCTAC
GCGATCGACG ACCTGAACGT GGGCGCCACT GGCGAACTGG AGGTGGTACT CACCGAAGCC
GATGGCCAGG TACGACGCTT CATCCAGCCC TATGCCAGCA TCACCAACCT GCTACGCCCC
GGGGTATGGC GCTACAGCAC CACGCTGGGC CGCTACAACC CGGCCAACAG CAGTGAAACC
CCACTGCTTT GGCAAGGGAC AGTGGCCAAG GGCATGCCCT GGAATGCCAC CCTTTATGGC
GGCCTTATGG CCAGCCAGGG CTACACCGCC GTAGCCACGG GGATCGCCCG GGACCTGGGA
GCAATCGGGG CGCTTTCCTT CGATATCACC CATGCACGCA GCGATATTAC CCCAGTGGAG
CAACGCACCC TGCAGGGCAT GAGCTACAGC GCCAGGTACA GCAAAGCCTT CAACAGCGGT
ACCCATTTGC GCTTTGCCGG GTACCGTTAC TCGACCCAAG GCTACCGGGA TTTCGACGAA
TGGATCAGCC AGCGCAGTAA CGACCGCTTG TTCCTTGGCA GCCGGCGAAG TCGGGTGGAA
GGCTCGATCA ACCAGCGTGT TGGCGAACGC AGCACGCTCA GCCTTACCCT GTCCCAACAG
GATTACTGGC AACGCCGCGA TAGCCAACGC CAGTTTCAAC TTAATTTCAG CACCTCGCAC
AACGGCGTCA GCTACAGCCT GTATGGGTCG CAATCGCTGA CGCAAAACGC TGCGGGCAGT
GACCGCCAGT TCGGCCTGAC CGTCTCGGTC CCGCTGGAAT TCGGCCGCAG CAGCAGCTTG
AGCCTGGACC TGCAGCACGC AGCCCACGGC ACCGCGCAGC GAGCAAGCTT GCACAGCCAG
GTCGACCGCC TGAGCTACAA CGCCACGCTC GCATCCAACG AGCAGCAGCA ACAAAGCGCT
GGCCTGTCCA TGGCCTACCA GGCACCACAG GCAACCTTCG GCGCCGGCCT CTCGGCAGCG
GACGACTACC GCAGCCTATC GCTGAACATG AGCGGCGCAG CGTTGCTGCA CGCCGACGGT
ATGGAACTGG GGCCTTACCT GGGTGAAACC ATTGGCCTGG TACATGTCCC CGACACCGCT
AACGTGGGGT TAAAGAACCA CGGCGCCATT CGCACCAACG CGAAAGGCTA CGCCCTGGTT
CCCTACTTGC GCCCGTACCG GCTCAACCAG CTGGTGCTGG ACACCGACCA ACTGGACCCG
GACGTAGAAA TCATCAACGG CACCGCCGAT GCCGTACCTC GCCGCGGCGC AGTCATCAAG
AGCCGGTTCG AGGCCCGCCG CGCCAACCGC ATGGTACTCA CCCTTGCCAC CAAGGATCAG
CAGCCATTGC CCTTTGGCAG CCAGCTGCAT GACGCAGACG GCAACGTGCT GGGTATGGTC
GGTACTGCTG GCCGCGTAAT GGTGTCGGTA ACCGATGGCC CGCAGCGGCT CGAAGTACGC
TGGGGCGAAG CATCCGAAAA CCGCTGCCGG TTCACGCTGA ACCCGCAATC GGTTCCTCAA
CAGCAAGGTT ATCGCCTGCA ATCACTGGCT TGCGAATGA
|
|---|
| Protein sequence | MILQPPGCRR FRLRLVCPLA ICLSTGTALA TPAPALGPEF EASFLYLSPG QPRANVTRAL
HALSDQKELP PGRYPVQLLV NLGPAGVRKL QFELSPDGRQ LVPCLAPSLM AELGLRLDAI
ADPTALDHAC LDLPRLVPGA LVDFDASQLR LAISIPQIAL RRDMAGQVDP ARWENGISAA
FVSYQASLQQ SDSRGRGSQN TQDLYLNSGI NLAGWRLRSN QSWRRDGEGR QTWSRAYTYA
QHDLPGTWGN ITLGETFTSS DVFRSVPVTG LRLASDFDML PDAMRSYAPT LRGVAQTRAK
LEVWQNGYPI YSTYVSPGPY AIDDLNVGAT GELEVVLTEA DGQVRRFIQP YASITNLLRP
GVWRYSTTLG RYNPANSSET PLLWQGTVAK GMPWNATLYG GLMASQGYTA VATGIARDLG
AIGALSFDIT HARSDITPVE QRTLQGMSYS ARYSKAFNSG THLRFAGYRY STQGYRDFDE
WISQRSNDRL FLGSRRSRVE GSINQRVGER STLSLTLSQQ DYWQRRDSQR QFQLNFSTSH
NGVSYSLYGS QSLTQNAAGS DRQFGLTVSV PLEFGRSSSL SLDLQHAAHG TAQRASLHSQ
VDRLSYNATL ASNEQQQQSA GLSMAYQAPQ ATFGAGLSAA DDYRSLSLNM SGAALLHADG
MELGPYLGET IGLVHVPDTA NVGLKNHGAI RTNAKGYALV PYLRPYRLNQ LVLDTDQLDP
DVEIINGTAD AVPRRGAVIK SRFEARRANR MVLTLATKDQ QPLPFGSQLH DADGNVLGMV
GTAGRVMVSV TDGPQRLEVR WGEASENRCR FTLNPQSVPQ QQGYRLQSLA CE
|
|---|
| |