| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_1414 |
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| Symbol | |
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| ID | 6110342 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | + |
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| Start bp | 1554995 |
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| End bp | 1557004 |
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| Gene Length | 2010 bp |
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| Protein Length | 669 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 641621188 |
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| Product | polysaccharide biosynthesis protein CapD |
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| Protein accession | YP_001748288 |
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| Protein GI | 170720600 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1086] Predicted nucleoside-diphosphate sugar epimerases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.987327 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.0491926 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGACG CGAACAAAGA CAGGGTGCGC CAGTACCTGG TGAACCTGTC CCGGCGTCAG
AAGCGCCTGA TACAGGTGTG CACCGACGTC GTGCTTATCT GGTTTGCACT GTGGCTGTCG
TTCATCGTGC GCCTGGGCAT CGATGAAATG TACAACCCCA TCATCGAACA CACCTGGCTG
TTCCTGGCTG CGCCGGTCGT GGCCATTCCG CTGTTCATCC GCTTTGGCAT GTACCGCGCG
GTGATGCGCT ACTTCGGCAA TGACGCGCTG GTTGCCATCA TCAAGGCGGT CACCTTGTCC
TCCTTGATAC TGGCTGTGGT GGTCTATTGG TACAGCAACC ATCAGGTCAT CGTGCCGCGT
TCGATCATTT TCAATTACTG GTGGCTGAGC CTGGTCATCA TGGGCGGCTT GCGCCTGATC
ATGCGCCAGT ATTTTCTGGG CGACTGGTTC AGCGGTGCTC ATCAAATCCC TTTTACCAAC
CGCGATGATG GCCAGGTCAA AGTTGCCATT TACGGCGCAG GCACGGCCGG CAACCAGTTG
CTGGCGGCAT TGCGCATGGG GCGTGTGATG CGCCCCGTGG CCTTCATTGA CGATGACGGC
GACCTGGCCA ACCGGGTCAT TTCCGGCCTG CAGGTGTACA AGCCCAAGCA CCTTGAACAG
ATGATCAAAG AAACCGGCGC CCAGGAAATC CTCCTGGCGC TGCCAACCGC TTCACGTGCG
CGGCGCAAAG AGATCCTTGC CTTCCTCGAA CCGTACCCGT TGCATGTGCG CAGTGTGCCG
GCGTTTGCCG ACCTGGCCAG TGGCCGGGTA AAGGTCGATG ACATCCAGGA TGTCGACATT
GCCGACTTGC TGGGCCGCGA CCCGGTGCCG GCGCAGGATG AACTGCTTTG GCGCTGCAAC
AAGAAGCGTA CCGTGCTGGT GACCGGCGCG GGCGGCTCGA TCGGCTCCGA GCTGTGCCGG
CAGATCATCG GGCTGGAGCC CAAGACCCTG CTGCTGTTCG ACCACAGTGA ATTCAACCTG
TACAGCATCC TCACCGAGCT TGAGCAGCGC ATTACGCGCG AGTCGCTGGC GGTGCAGTTG
TTGCCGATTC TGGGTTCGGT GCGTAACCAG CAGCACCTGG CCGATGTGAT GAGCACCTGG
CGGGTGGACA CCGTGTATCA CGCGGCGGCC TACAAGCACG TGCCAATGGT CGAGCACAAC
GTGGCCGAAG GCATCCTCAA CAATGTGTTC GGCACGCTGT GCACGGCGCA GGCCGCGCTG
CAGACGGGGG TGGCCAACTT TGTGCTGATC TCCACCGACA AGGCCGTACG CCCGACCAAC
GTGATGGGCA GCTCCAAGCG GTTGTCCGAG TTGATCCTGC AGGCGCTGAG CCGCGAAGCG
GCGCCGGTGA TGTATGGCGA CAGCAGCAAG ATTTCCCGGG TGAATAAAAC CCGCTTCACC
ATGGTGCGCT TTGGCAATGT GCTGGGCTCT TCCGGTTCTG TGATTCCGTT GTTCCATCAG
CAGATCAAAG CCGGTGGCCC GCTGACGGTG ACCCACCCCA AGATCACCCG CTATTTCATG
ACCATCCCCG AGGCTGCGCA GCTGGTGGTG CAGGCGGGGG CCATGGGGCA GGGCGGCGAT
GTGTTCGTGC TGGACATGGG CGAGCCGGTA AAAATCGTCG AGCTGGCAGA AAAGATGGTC
CACCTGTCGG GCTTCAGTGT GCGCAGCCCG GATAACCCGC ACGGTGACAT TGCCATCGAG
TTCAGCGGGC TACGGCCCGG CGAGAAGCTT TATGAAGAGT TGCTGATTGG CGATGACGTC
TCCCCAACGG CGCACCCGAT GATCATGGCG GCCAACGAAG ACTTCATCGC CTGGGACGTA
TTGCGCGAGC GCTTGGCCAT GCTGTTCAAG GCCGTGGCCG AAGATGACTT CACCCGCGTG
CGGCAACTGC TGCGCGAACT GGTCAGCGGC TACTCGCCAG AGGGTGACAT TGTCGACTGG
GTTTACCAGC AGCAGCGTCG GGACCGCTAG
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| Protein sequence | MSDANKDRVR QYLVNLSRRQ KRLIQVCTDV VLIWFALWLS FIVRLGIDEM YNPIIEHTWL
FLAAPVVAIP LFIRFGMYRA VMRYFGNDAL VAIIKAVTLS SLILAVVVYW YSNHQVIVPR
SIIFNYWWLS LVIMGGLRLI MRQYFLGDWF SGAHQIPFTN RDDGQVKVAI YGAGTAGNQL
LAALRMGRVM RPVAFIDDDG DLANRVISGL QVYKPKHLEQ MIKETGAQEI LLALPTASRA
RRKEILAFLE PYPLHVRSVP AFADLASGRV KVDDIQDVDI ADLLGRDPVP AQDELLWRCN
KKRTVLVTGA GGSIGSELCR QIIGLEPKTL LLFDHSEFNL YSILTELEQR ITRESLAVQL
LPILGSVRNQ QHLADVMSTW RVDTVYHAAA YKHVPMVEHN VAEGILNNVF GTLCTAQAAL
QTGVANFVLI STDKAVRPTN VMGSSKRLSE LILQALSREA APVMYGDSSK ISRVNKTRFT
MVRFGNVLGS SGSVIPLFHQ QIKAGGPLTV THPKITRYFM TIPEAAQLVV QAGAMGQGGD
VFVLDMGEPV KIVELAEKMV HLSGFSVRSP DNPHGDIAIE FSGLRPGEKL YEELLIGDDV
SPTAHPMIMA ANEDFIAWDV LRERLAMLFK AVAEDDFTRV RQLLRELVSG YSPEGDIVDW
VYQQQRRDR
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