| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_1185 |
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| Symbol | |
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| ID | 6110109 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | - |
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| Start bp | 1313630 |
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| End bp | 1314910 |
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| Gene Length | 1281 bp |
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| Protein Length | 426 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 641620955 |
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| Product | TRAP dicarboxylate transporter, DctM subunit |
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| Protein accession | YP_001748059 |
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| Protein GI | 170720371 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0078152 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.144434 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATGCGT TCATTCTGTT GGGCAGTTTC ATCGTGCTCA TCCTGATCGG TATGCCGGTG
GCCTTCGCCC TGGGCCTGTC GGCGCTGATC GGCGCCTGGT GGATCGACAT TCCGCTGCAG
GCGATGATGA TTCAGATCGC CAGTGGGGTT AACAAGTTTT CACTGCTGGC CATTCCGTTC
TTCGTGCTGG CTGGCGCAAT CATGGCCGAA GGTGGCATGT CACGGCGGTT GGTGGCCTTC
GCCGGGGTAC TGGTGGGCTT CGTACGGGGC GGGTTGTCGC TGGTCAATAT CATGGCCTCG
ACCTTCTTCG GCGCCATTTC CGGCTCGTCG GTGGCTGACA CCGCGTCTGT AGGCTCGGTA
CTGATCCCCG AGATGGAGCG CAAGGGCTAC CCGCGCGAGT TCTCCACGGC AGTGACCGTC
AGCGGCTCGG TGCAGGCACT GCTCACACCA CCCAGCCACA ACTCGGTGCT GTACTCGCTG
GCGGCGGGCG GCACAGTGTC GATCGGCTCG CTGTTCATTG CGGGGATCAT GCCCGGCTTG
CTGCTGAGCG CGGTGATGAT GGGCCTGTGC CTGATTTTCG CCAAGAAACG CAACTACCCC
AAAGGTGAAG TGATCCCGCT GCGTCAAGCG TTGAAGATCG CCGGCGAAGC ACTGTGGGGC
CTGATGGCGA TGGTCATCAT CCTCGGCGGT ATTCTCTCGG GCGTGTTCAC CGCCACCGAG
TCAGCTGCCG TGGCAGTGGT CTGGTCGTTC TTCGTGACCA TGTTCATTTA CCGTGACTAC
AAGTGGCGGG ACCTGCCCAA GCTGATGCAC CGTACGGTAC GGACCATCTC GATCGTGATG
ATCCTGATCG GCTTTGCCGC CAGCTTCGGC TACGTGATGA CGCTGATGCA GATCCCGTCG
AAGATCACCA CAGTGTTCCT GACCCTGTCG GACAACCGCT ACGTGATCCT GATGTGCATC
AACTTCATGC TGTTGCTGCT GGGCACGGTG ATGGACATGG CACCGCTGAT CCTGATCCTG
ACGCCGATCC TGCTGCCAGT GATCACCGGC ATAGGTGTGG ACCCGGTGCA CTTCGGCATG
ATCATGCTGG TGAACCTGGG TATCGGGTTG ATCACCCCAC CGGTGGGTGC GGTGCTGTTC
GTCGGCTCGG CCATCGGCAA GGTGAGCATC GAATCGACGG TGAAGGCGCT GCTGCCGTTC
TACCTGGCGC TGTTCCTGGT GCTCATTGCG GTCACCTACA TTCCGGCCAT CTCGCTGTGG
CTGCCGAGCG TCGTGCTGTA A
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| Protein sequence | MDAFILLGSF IVLILIGMPV AFALGLSALI GAWWIDIPLQ AMMIQIASGV NKFSLLAIPF
FVLAGAIMAE GGMSRRLVAF AGVLVGFVRG GLSLVNIMAS TFFGAISGSS VADTASVGSV
LIPEMERKGY PREFSTAVTV SGSVQALLTP PSHNSVLYSL AAGGTVSIGS LFIAGIMPGL
LLSAVMMGLC LIFAKKRNYP KGEVIPLRQA LKIAGEALWG LMAMVIILGG ILSGVFTATE
SAAVAVVWSF FVTMFIYRDY KWRDLPKLMH RTVRTISIVM ILIGFAASFG YVMTLMQIPS
KITTVFLTLS DNRYVILMCI NFMLLLLGTV MDMAPLILIL TPILLPVITG IGVDPVHFGM
IMLVNLGIGL ITPPVGAVLF VGSAIGKVSI ESTVKALLPF YLALFLVLIA VTYIPAISLW
LPSVVL
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