| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_1067 |
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| Symbol | algU |
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| ID | 6109986 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | + |
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| Start bp | 1172883 |
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| End bp | 1173464 |
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| Gene Length | 582 bp |
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| Protein Length | 193 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 641620832 |
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| Product | RNA polymerase sigma factor AlgU |
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| Protein accession | YP_001747941 |
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| Protein GI | 170720253 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02939] RNA polymerase sigma factor RpoE |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.0360661 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCTAACCC AGGAAGAGGA TCAGCAGCTT GTAGAGCGCG TGCAGCGCGG TGACAGGCGA
GCGTTCGATC TGTTGGTGCT GAAGTATCAG CACAAGATTC TCGGGTTGAT CGTGCGGTTC
GTTCACGATA CCCACGAGGC CCAGGATGTG GCGCAGGAAG CCTTTATCAA GGCCTACCGT
GCGCTCGGCA ATTTTCGCGG TGACAGTGCG TTTTATACCT GGCTGTACCG CATCGCCATC
AACACGGCGA AGAACTATCT GGTGTCCCGT GGAAGACGGC CGCCAGACAG CGATGTGAGC
TCCGAGGATG CGGAGTTTTA CGACGGCGAT CATGGTCTCA AGGATCTCGA GTCCCCAGAG
CGCTCCCTGT TGCGGGATGA AATCGAAGGC ACAGTCCATC GCACAATCCA GCAACTCCCT
GAAGATTTGC GCACGGCATT GACCCTGCGT GAGTTCGACG GGTTGAGTTA CGAAGACATT
GCCAGTGTCA TGCAATGTCC GGTGGGTACC GTGCGCTCTC GAATCTTCCG CGCTCGGGAG
GCCATAGACA AAGCCCTGCA GCCGTTGTTG CAGGAAACCT GA
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| Protein sequence | MLTQEEDQQL VERVQRGDRR AFDLLVLKYQ HKILGLIVRF VHDTHEAQDV AQEAFIKAYR
ALGNFRGDSA FYTWLYRIAI NTAKNYLVSR GRRPPDSDVS SEDAEFYDGD HGLKDLESPE
RSLLRDEIEG TVHRTIQQLP EDLRTALTLR EFDGLSYEDI ASVMQCPVGT VRSRIFRARE
AIDKALQPLL QET
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