| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_0942 |
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| Symbol | murD |
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| ID | 6109860 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | + |
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| Start bp | 1036360 |
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| End bp | 1037706 |
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| Gene Length | 1347 bp |
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| Protein Length | 448 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641620706 |
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| Product | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase |
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| Protein accession | YP_001747816 |
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| Protein GI | 170720128 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0771] UDP-N-acetylmuramoylalanine-D-glutamate ligase |
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| TIGRFAM ID | [TIGR01087] UDP-N-acetylmuramoylalanine--D-glutamate ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.310751 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 57 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTCACTGA TCGCTTCCGA CCAATTCCGC ATCGTTGTCG GCCTCGGCAA GAGCGGCATG
TCCCTGGTTC GCTTCCTGGC GAACCGGGGC ATTGCCTTTG CGGTCGCCGA CACCCGCGAG
CAACCGCCGG AACTGGACAC CCTGCGCCGT GATTACCCGC AGGTGGAAGT ACGCTGTGGC
GAACTGGACG TGGATTTCCT GTGCCGCGCC AACGAGTTGT ACGTGAGCCC GGGCCTGGCA
CTGGCCACGC CGGCCCTGCA GCAGGCAGCG GCGCGTGGCG TGAAACTGTC CGGTGATATC
GAGCTGTTCG CACGCCATGC CAAGGCGCCG ATCGTGGCGA TCAGTGGCTC CAATGCGAAA
AGCACAGTAA CCACCCTGGT CGGCGAGATG GCTGCCAAGG CCGGCAAACA CGTGGCCGTC
GGCGGCAATC TGGGTACACC GGCCCTGGAC CTGCTCAGTG ACGACGTCGA GCTGTATGTC
ATGGAGCTGT CCAGCTTCCA GCTGGAAACC ACCGACCAGC TCAACGCCGA AGTCGCCACC
GTGCTGAACA TCAGCGAAGA CCATATGGAC CGCTACAGCG GCCTGCCGGC TTATCACTTG
GCCAAGCACC GGATATTCCG TGGCGCCCGC CAAGTGGTGG TGAACCGCCA GGATGCCCTT
AGCCGTCCTT TGCCGGTCGA AGGTCGCCCG TGCTGGAGTT TCGGCCTGAA TCAGCCGGAC
TTCAAAGCCT TCGGCCTGCG TGAAGTCGAT GGTGAGAAGT ACCTGGCTTT CGAGTTCCAG
GCACTGATGC CGGCCCGTGA GCTGAAAATT CGGGGTGCCC ACAATCAGAG CAACGCCTTG
GCGGCCCTGG CCCTGGGGCA TGCCGCCGGT CTGCCGTTCG AGCCGATGCT CGAGGCTCTG
CGCGAATTCG GCGGCCTGGC CCATCGTTGC CAGTGGGTGC GCGCGCGCAG CGGTGTGAAC
TGGTACGACG ACTCCAAAGC GACCAACGTC GGAGCGGCCC TGGCCGCTAT CGAAGGCCTG
GGCGCGGATA TCGACGGCAA GCTGGTGCTG ATCGCCGGTG GCGACGGCAA GGGTGCCGAT
TTTGCCGCCC TGCGTGAGCC GGTGGCACGC TTCTGCCGCG CTGTGGTGTT GCTCGGCCGT
GATGCCGACC GCCTGGCCGA GGCGCTCGGT GATGCCGTGC CGCTGGTGCG GGTCAAAACG
CTGGACGAGG CCGTGCAGCA GTGCGCCGAG CTGGCCGTGC CGGGTGACGC TGTGTTGTTG
TCGCCGGCCT GCGCCAGCCT CGACATGTTC AAGAACTTTG AAGAACGCGG GCGGCTGTTC
GCCCAGGCGG CGGGGGGGCT GGCATGA
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| Protein sequence | MSLIASDQFR IVVGLGKSGM SLVRFLANRG IAFAVADTRE QPPELDTLRR DYPQVEVRCG
ELDVDFLCRA NELYVSPGLA LATPALQQAA ARGVKLSGDI ELFARHAKAP IVAISGSNAK
STVTTLVGEM AAKAGKHVAV GGNLGTPALD LLSDDVELYV MELSSFQLET TDQLNAEVAT
VLNISEDHMD RYSGLPAYHL AKHRIFRGAR QVVVNRQDAL SRPLPVEGRP CWSFGLNQPD
FKAFGLREVD GEKYLAFEFQ ALMPARELKI RGAHNQSNAL AALALGHAAG LPFEPMLEAL
REFGGLAHRC QWVRARSGVN WYDDSKATNV GAALAAIEGL GADIDGKLVL IAGGDGKGAD
FAALREPVAR FCRAVVLLGR DADRLAEALG DAVPLVRVKT LDEAVQQCAE LAVPGDAVLL
SPACASLDMF KNFEERGRLF AQAAGGLA
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