Gene PputW619_0874 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputW619_0874 
Symbol 
ID6109791 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida W619 
KingdomBacteria 
Replicon accessionNC_010501 
Strand
Start bp964554 
End bp966005 
Gene Length1452 bp 
Protein Length483 aa 
Translation table11 
GC content67% 
IMG OID641620638 
ProductRND efflux system outer membrane lipoprotein 
Protein accessionYP_001747748 
Protein GI170720060 
COG category[M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1538] Outer membrane protein 
TIGRFAM ID[TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones38 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACCGG CATTACGCTT GAGCCCCTTG CTGCTAGCCG TGCTGATGGC CGGCTGCACC 
CTGGGCCCCG ACTTCAAGCG CCCGGCCAGC CAGGCCCCGC AGCAATGGGC ACCGCTGCAG
GGCCAAGCTG CACCCAGCCA GCCGCAGGCA GAAGCGCTTG AACTGCGTTG GTGGGAGACC
TTCCACGATG CGCGCCTGAG TGCGCTGATC CAGCAGGTGG CCGAGCGTAA CCTCGACCTG
CAGATCGCCA GTGCGCGGCT GCTGCAAAGC CGCGCCTTGC GCAGTACGGT GGCTGCCGAC
CAGGCGCCGT CGGTCGATGT GGATGGCGGC TACAGCCGCG CCCGTAATAG TGCCGAAGGC
CTCAGCGACC CGTCCGGCAA GGCAGGCAAG TCGGCGTTCA ACCTGTGGCA GGGCGACCTG
GTCGCCGGTT GGGAGCTGGA CCTCTGGGGC CGGGTGCGCC GGCAGGTGGA GGCTGCCGAC
GCCACGGTGG AAGTGGCCGA GAATGACCGG CGCGGCGTGC TCTTGGCGCT GTTGTCGGAA
ACCGCAGGCA ACTACATCCA GTTGCGTGCC GTGCAGCACA CGCTCGATGT CACGCGCGAC
AACCTGAAGG TCGCCCGGCA CAGCCTGAAG CTGTCCCAGG ACCGCCAGGC CGAGGGTGTC
GCCACCCGGC TCGACGTGGC CCAGGCCAGT GCCCAGGTTG CCTCGATCGA GGCCCGTCTG
CCGAGCCTGG AGGCCCGGCG CGACGACCTG ATAAACGCGC TCAGCCTGCT GGCGGCCGAG
CCGCCACGCA GTTTGCAGGC ACAGTTGCTT GAGGGCGGGG AGTTGCCCGC GCCGCAGCAG
CAATTTGCGA TCGGCTTGCC ATCCGAGCTG GCCGAGCGCC GTCCGGACAT CCGCCAGGCC
GAGGCACGGC TGCATGCGGC CACTGCCAGC ATTGGCGTGG CCAAGGCGGA TTTCTACCCC
AGCATCCGGC TGTCCGGCAG CGTCGGCTTC CAGGCCATGC AACTGTCGGA TTTCGGCGCT
TGGGACTCGC GCCGCTTTGC CTTCGGCCCA CAGCTGTCAT TGCCGATCTT CGAGGGTGGC
CGGCTCAAGG GTACCCTGGC GCTGCGCGAG GCGCAGCAGC AGGAGGCGGC GCTCAACTAC
CGCAAGGTGG TGCTCGGTGC CTGGCACGAG ATCGACGATG TGCTGCGCCT GTACAACGCC
AGCCAGCTGC GCCGTGATCA TTTGGCCGAA GCGGTGCGGC AAAACCGCAT CGCCCTGGAA
ACCGCCCAGC GTCAGTACGT GGAAGGCGCA GTGGACTTTC TCAACGTGCT GACCGTGCAG
AGTGCGTTGC TGGCCAGCGA AGAGCAGTGG ATCGACAGTT CGGCGGCGGT ATCGCAGGCA
TTGGTCGGGC TGTACAAGGC TTTGGGTGGT GGCTGGCAGG CGTTCGACGG GCAGCCGACG
ACAAAGGTGT GA
 
Protein sequence
MKPALRLSPL LLAVLMAGCT LGPDFKRPAS QAPQQWAPLQ GQAAPSQPQA EALELRWWET 
FHDARLSALI QQVAERNLDL QIASARLLQS RALRSTVAAD QAPSVDVDGG YSRARNSAEG
LSDPSGKAGK SAFNLWQGDL VAGWELDLWG RVRRQVEAAD ATVEVAENDR RGVLLALLSE
TAGNYIQLRA VQHTLDVTRD NLKVARHSLK LSQDRQAEGV ATRLDVAQAS AQVASIEARL
PSLEARRDDL INALSLLAAE PPRSLQAQLL EGGELPAPQQ QFAIGLPSEL AERRPDIRQA
EARLHAATAS IGVAKADFYP SIRLSGSVGF QAMQLSDFGA WDSRRFAFGP QLSLPIFEGG
RLKGTLALRE AQQQEAALNY RKVVLGAWHE IDDVLRLYNA SQLRRDHLAE AVRQNRIALE
TAQRQYVEGA VDFLNVLTVQ SALLASEEQW IDSSAAVSQA LVGLYKALGG GWQAFDGQPT
TKV