Gene PputW619_0723 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputW619_0723 
SymboltruB 
ID6109635 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida W619 
KingdomBacteria 
Replicon accessionNC_010501 
Strand
Start bp796972 
End bp797889 
Gene Length918 bp 
Protein Length305 aa 
Translation table11 
GC content62% 
IMG OID641620482 
ProducttRNA pseudouridine synthase B 
Protein accessionYP_001747597 
Protein GI170719909 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0130] Pseudouridine synthase 
TIGRFAM ID[TIGR00431] tRNA pseudouridine 55 synthase 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.806567 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.0309098 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGCCCAGG TCAAACGTAT CCGCCGCAAC GTCAGCGGCA TCATCCTGCT CGACAAGCCT 
CTGGGGTTCA CCTCCAACGC CGCACTGCAG AAAGTGCGCT GGTTGCTCAA CGCAGAAAAG
GCCGGCCACA CCGGCAGCCT CGACCCGTTG GCCACCGGCG TGCTGCCGCT GTGTTTCGGC
GAAGCGACCA AGTTTTCGCA GTACCTGCTC GATTCCGACA AGGGCTACGA GACCGTCATG
CAGCTGGGGC AGACTACAAA TACTGCCGAT GCAGAAGGCG AGGTCCTGCA AACCCGTGAA
GTGACCGTTG GTCGTGCCGA CATCGAGGCG CTACTGCCAC GTTTTCGCGG CCCGATCAGC
CAGATACCGC CGATGTACTC GGCGCTCAAG CGTGATGGTC AGCCGCTTTA CAAGCTGGCA
CGTGCAGGAG AGGTAGTGGA GCGCGAGGCG CGTTCTGTTA CTATTAACCA CTTGGAGTTG
CTCGAGTGCG AAGGCACCCG TGCACGGCTG AGCGTAGGAT GCAGCAAAGG CACCTATATC
CGCACCCTGG TGGAGGATAT CGGCGAGGCC CTCGGCTGCG GCGCCTATGT TGCCGAGCTG
CGCAGGACCC ACGCCGGGCC CTTCGAGCTG GCCCAGACCG TGACCCTCGA GGAACTCGAA
CAGGCCCACG CCGAAGGTGG CAACGAAGCG CTCGATCGCT TCCTCATGCC TTCGGACAGT
GGCCTGCAGG ACTGGCCGCT GATCGGCTTG TCCGAACACA GTGCGTTCTA CTGGCTGCAT
GGCCAGGCGG TACGTGCTCC GGACGCGCCG CAATTTGGCA TGGTCCGGGT ACAGGATCAC
AATGGTCGTT TCATCGGTAT CGGTGAAGTG AGCGAAGACG GGCGTATTGC GCCGCGTCGA
CTGATTCGGT CGGAATGA
 
Protein sequence
MAQVKRIRRN VSGIILLDKP LGFTSNAALQ KVRWLLNAEK AGHTGSLDPL ATGVLPLCFG 
EATKFSQYLL DSDKGYETVM QLGQTTNTAD AEGEVLQTRE VTVGRADIEA LLPRFRGPIS
QIPPMYSALK RDGQPLYKLA RAGEVVEREA RSVTINHLEL LECEGTRARL SVGCSKGTYI
RTLVEDIGEA LGCGAYVAEL RRTHAGPFEL AQTVTLEELE QAHAEGGNEA LDRFLMPSDS
GLQDWPLIGL SEHSAFYWLH GQAVRAPDAP QFGMVRVQDH NGRFIGIGEV SEDGRIAPRR
LIRSE