Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputW619_0498 |
Symbol | ligB |
ID | 6109406 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida W619 |
Kingdom | Bacteria |
Replicon accession | NC_010501 |
Strand | - |
Start bp | 544308 |
End bp | 546011 |
Gene Length | 1704 bp |
Protein Length | 567 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 641620254 |
Product | NAD-dependent DNA ligase LigB |
Protein accession | YP_001747372 |
Protein GI | 170719684 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.436093 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 44 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCTTTTT TCCTGCGCCT CGCAGCCCTG TTGCTGCTCC ACACGTCCAT CGCCCAAGCC AGTCACTGTC CGGACTGGAG TACCAAGCAA GCCAGAACCG AAGTTGCCCA ACTTCGCGCA ACCCTGGCCA ACTGGGACGA CCATTACCAC CGCCAGGGTA TAGCGCTCGT AGCCGATGAA CTCTACGACC AGGCCCGACA CCACCTGCTG CACCTGCAAC AATGCTTTGG TCAGGAATTC ACAGATCCAA GCCCACTGGC CAGCGCACGC GGCCCTATTG CCCACCCCGT TGCCCACACC GGCGTCGAGA AACTCCATGA CGCAGCTGCC GTTGCACGCT GGATGACCGG CAAGAAGGGC GTATGGGTGC AGCCGAAGGT CGACGGAGTG GCAGTCTCAC TGGTCTATCG CCAAGGCCGG CTGGTACAGC TGCTCAGCCG TGGTGATGGC CTCCAGGGGC ATGACTGGAG CCGCCACATC AAGGACCTCG ACAGCATCAC TAGGCAATTG CCTCAACCAC TGGACGTCGT ATTGCAAGGC GAGTTGTACC TGCGCCTGCA AGCGCACGTG CAAGCTGAGG CAGGCAGCAG CAATGTGCGC GGCACCGTGG CCGGGATGCT GGCACGCAAG CAGCTTGGCC CTGAACCGGG CGCGAGCATC GGCCTGTTCG TCTGGGACTG GCCGCACGGG CCGGACAACC AGGGCGAGCG CCTCACACAA CTTGCAGCCT GGGGGTTCCC CGACAGTCAG CGTTTCAGCA CAGCTATCGA CACCCCCGAA GAGGCTACCC ACTGGCGCCT GCACTGGTAC CGCTCACCGC TGCCCTTCGC CACCGATGGC GTGATTCTGC GCCAGGACAG CCGCCCCCCG GCCGACCGCT GGCAGCCCAA CGCCCCCTAT TGGATCGCCG CGTGGAAATA CCCCTTCGCC CAAGCGCTGG CAGAGGTACG GGAGGTACGC TTTCTAATCG GCCGCACAGG CAAAGTCACG CCGTTGCTCA GGCTCAAACC GGTCACCCTG GATGATCGCC GGATCAGCCA GGTCAGCCTC GGGTCCCTGG CCCGCTGGCG GGCGCTCGAC ATTCGCCCGG GCGATCAAGT TGCGATCAGC CTTGCCGGCC TGACCATTCC ACGCTTCGAC CAAGTGGTCC ACCGCGCCGT CGAGCGTCAG GTATTACCTG TACCCGAAGC TGAACAGTAC GGCCAACACA GTTGCTGGCA AGCCAGCGAC GGCTGCCAAG AGCAGTTTAT CGCGCGCCTC GTCTGGCTCA GTGGCAAGCA GGGCCTGGCC ATGCCAGGCA CCGGCAAGGG CACCTGGAAG CGGCTGGTTC AGGCAGGGCT GGTGACATCG CTGACGGATT GGTTGACGCT CGATGCCCAA CAGCTGTTAT CGGTACCGGG CATCAGCAGG AAAACCGCCA CACAGCTACA ACGCAGTTTC GACATAGGCC GCAACAGACC TTTCGCTCAG TGGCGCAAAG GGTTGGGCGT ACCGGCGCCA GCTCAGGTGC CACGGGACGA GAACTGGCAA ACGCTGGCCG GCCGGTCTGC CAGCGATTGG CAAACCTTGC CCGGCATTGG CGCAACACGC GCCACTCAAC TCGCGAACTT TTTCACCCAT GAGCAAGTAC AACGGATAGC CACGCTGCTG GGAACCCGTG GGATCGATGG TTTTCACGGG ACAGACGACG TTGGTTCGCA ATAG
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Protein sequence | MSFFLRLAAL LLLHTSIAQA SHCPDWSTKQ ARTEVAQLRA TLANWDDHYH RQGIALVADE LYDQARHHLL HLQQCFGQEF TDPSPLASAR GPIAHPVAHT GVEKLHDAAA VARWMTGKKG VWVQPKVDGV AVSLVYRQGR LVQLLSRGDG LQGHDWSRHI KDLDSITRQL PQPLDVVLQG ELYLRLQAHV QAEAGSSNVR GTVAGMLARK QLGPEPGASI GLFVWDWPHG PDNQGERLTQ LAAWGFPDSQ RFSTAIDTPE EATHWRLHWY RSPLPFATDG VILRQDSRPP ADRWQPNAPY WIAAWKYPFA QALAEVREVR FLIGRTGKVT PLLRLKPVTL DDRRISQVSL GSLARWRALD IRPGDQVAIS LAGLTIPRFD QVVHRAVERQ VLPVPEAEQY GQHSCWQASD GCQEQFIARL VWLSGKQGLA MPGTGKGTWK RLVQAGLVTS LTDWLTLDAQ QLLSVPGISR KTATQLQRSF DIGRNRPFAQ WRKGLGVPAP AQVPRDENWQ TLAGRSASDW QTLPGIGATR ATQLANFFTH EQVQRIATLL GTRGIDGFHG TDDVGSQ
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