| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_0404 |
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| Symbol | |
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| ID | 6109312 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | + |
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| Start bp | 433864 |
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| End bp | 435867 |
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| Gene Length | 2004 bp |
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| Protein Length | 667 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 641620161 |
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| Product | choline/carnitine/betaine transporter |
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| Protein accession | YP_001747279 |
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| Protein GI | 170719591 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 0.766464 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTTCTG CCTCCCTTAC CAAACCCCCC GCCGAGAGGG TACGGGTCAA TCGCGTAGTG
TTTTTCACCT CCGCGCTGAT GATCCTCGTT TTGACTGCCT TGCTTATCGC TGTTCCCGAA
ACTGCCGGTC AGGTACTGGG CGTGGCCCAG AAGTGGCTGA CACGCACCTT CGGCTGGTAC
TACATGCTGG TGATCTGCGG TTACCTGCTG TTTGTCGTTT ACCTGGCGTT CTCCGACTAC
GGCAAGCTCA AGCTCGGCGG CAAGGATGAC CAGCCCGACT TCAGCTACGG CGCCTGGGCC
GGCATGCTGT TCTCCTCCGG TATCGGTATC TCGTTGCTGT ACTTCGGCGC CTCTGAGCCG
CTGGACCACT ACTTCAATCC GCCCCAGGGC ACCCCTGCCA GCCTCGAGGC CGCGCGCCAG
GGCCTGCAAC TGACCTTCCT GCACTGGGGG CTGCATGGCT GGGCGATCTA CGCCCTGGTC
GGTCTGGCCG TAGGCTACTT CGCCTACCGC CACAATCAGC CGCTGGCGCT GCGCTCGGCA
CTGTATCCGC TGGTCGGTGA GCGTTGGGTC AAGGGTGCTG CTGGCAACGC CGTGGATATC
TTTGGCATGT TCGTCACCCT GCTGGGTCTG GTGACCAACC TGGGGATCGG CGCGATGCAG
GTGTCCTCGG GCCTTGAATA CCTGTTCGGC ATGGACCACA GCCAGACCAG CCTGCTGGTG
GTGATTCTGG TCATGGCCGG CGTGGCTACG GTGGCTGCGG TATCAGGTGT GGAAAACGGT
ATTCGCCGCC TGTCCAACCT GAACATTATG CTGTTCAGTG GTTTGCTGAT CTTCGTGCTG
CTGGGCGGTG AGACCCTGCA CCTGCTCAAC GGCCTGGTGC AGAACGTCGG CGACTACCTC
AACGGCATCG TACTGAAGAC TTTCGACCTT TATGTCTACG AAGGCGAGGC CGGCAACTCT
GAGCGCTGGT TAGGCCTGTG GACCGTGTTC TACTGGGCGT GGTGGATCTC CTGGGGTCCG
TTCGTCGGCA TGTTCATTGC CCGTATCTCC AAGGGCCGTA CCGTGCGCCA ACTGGTCTGC
GGCGTACTGC TGATCCCGCT GGGCTTCACC CTGGCCTGGT TGTCGATCTT CGGTAACACC
GCACTTGACC TGGTGATCAA CCAGGGCGCC GTCGAGCTGG GCAAGACCGC GCTGGAGCAG
CCGTCGATGT CGATCTACCA GCTGCTGGAG TATTTCCCAG CCGCCAAGAT CGTGATCGGT
GTGGCGGTGT TCGTGGGCTT CGTGCTGTTC CTCACTCCGG CCGACTCCGG CGCGGTGATG
ATGGCCAACC TGTCGTGCAA AGGTGGCAAG GTCGACGAAG ATGCTCCGCA CTGGATGGTG
GTGTTCTGGT CGGTGATCAT CACCCTGGTC ACCATTGGCC TGCTGTTCGC CGGTAACTTC
GAAGCCATGC AGACCATGGT GGTGCTGGCG GGCCTGCCGT TCTCGGTGGT GCTGGTACTG
TTCATGTTCG GCCTGTACAA GGCCATGAAG CAGGACGTTG CCGTGGAGCA GGAGCGTGCC
GAGCTGGCTG CCCGTGGTCG CCGCGGTTTC AGTGAGCGTC TGAGCCAGTT GGAGCTGCAG
CCGACCCAGG CAGTGGTGCA GCGCTTCATG GACAGGCAGG TCAGTCCGGC CCTTAAAGAG
GCTGCCGAGC AGCTGCGCAC CCTGGGCTTT GATGTCGAGA GCCGTGTTGG CCAGTCGCGC
AACATGATGG GCCTGCGGGT GATGATGGAA GAGGGCAACC CTTTCGTTTA CGAAGTGAGC
CTGGACGGTT ACATGGCCGC ACCGAGCGAT GCGCCGGTCG AGGGCGAGCC AGAGGTGCGC
CAGCGCTTCT ATCGCGCCGA AGTGTACCTG CACGATGGCA GCCAGGAGTA CGACCTGATG
GGCTTCGCGC CTGAGCAGAT CGTGCGTGAT GTTCTCGACC AGTTCGAGAG CCATCGCCAG
TTGCTGGGTC GCGTCTACAG CTGA
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| Protein sequence | MSSASLTKPP AERVRVNRVV FFTSALMILV LTALLIAVPE TAGQVLGVAQ KWLTRTFGWY
YMLVICGYLL FVVYLAFSDY GKLKLGGKDD QPDFSYGAWA GMLFSSGIGI SLLYFGASEP
LDHYFNPPQG TPASLEAARQ GLQLTFLHWG LHGWAIYALV GLAVGYFAYR HNQPLALRSA
LYPLVGERWV KGAAGNAVDI FGMFVTLLGL VTNLGIGAMQ VSSGLEYLFG MDHSQTSLLV
VILVMAGVAT VAAVSGVENG IRRLSNLNIM LFSGLLIFVL LGGETLHLLN GLVQNVGDYL
NGIVLKTFDL YVYEGEAGNS ERWLGLWTVF YWAWWISWGP FVGMFIARIS KGRTVRQLVC
GVLLIPLGFT LAWLSIFGNT ALDLVINQGA VELGKTALEQ PSMSIYQLLE YFPAAKIVIG
VAVFVGFVLF LTPADSGAVM MANLSCKGGK VDEDAPHWMV VFWSVIITLV TIGLLFAGNF
EAMQTMVVLA GLPFSVVLVL FMFGLYKAMK QDVAVEQERA ELAARGRRGF SERLSQLELQ
PTQAVVQRFM DRQVSPALKE AAEQLRTLGF DVESRVGQSR NMMGLRVMME EGNPFVYEVS
LDGYMAAPSD APVEGEPEVR QRFYRAEVYL HDGSQEYDLM GFAPEQIVRD VLDQFESHRQ
LLGRVYS
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