| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_0364 |
|---|
| Symbol | |
|---|
| ID | 6109144 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida W619 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010501 |
|---|
| Strand | - |
|---|
| Start bp | 381983 |
|---|
| End bp | 383170 |
|---|
| Gene Length | 1188 bp |
|---|
| Protein Length | 395 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641620121 |
|---|
| Product | coproporphyrinogen III oxidase |
|---|
| Protein accession | YP_001747239 |
|---|
| Protein GI | 170719551 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0635] Coproporphyrinogen III oxidase and related Fe-S oxidoreductases |
|---|
| TIGRFAM ID | [TIGR00539] putative oxygen-independent coproporphyrinogen III oxidase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.250524 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 46 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCGAAC TGTTGTCTAC CCAGCCGCGC CAGCCTGGCG TGGCGGGTTT CGCCACGCTG
CCACCTTTGG CACTGTACAT CCACATTCCG TGGTGCGTGC GCAAATGCCC TTACTGCGAC
TTCAACTCCC ATGCGGCTGG GCCTGATCTT CCGGAAGAGG CCTATGTCGA TGCCCTGCTG
ACCGACCTCG ACCAAGAGCT GCCTGCTGTT CAGGGAAGGC CAATATCATC GATCTTCTTC
GGCGGCGGCA CCCCTAGCCT GTTCAGCGCC AATGCCCTTG GCAGGCTGCT GCGCGGCGTG
GAGCAACGCA TCCCCTTCGA GCCGGACATC GAGATCACCC TGGAAGCCAA CCCCGGGACG
TTCGAGCAGG AGAAATTCAA GGCGTACCGG CAAACGGGCA TCAATCGCCT GTCGATTGGC
GTACAGAGCT TCCAGCCGGC CAAACTGCAA GCGCTGGGGC GCATCCACAA TGGCGACGAA
GCAATCCGCG CAGCGGGCAT GGCCCGGGCA GCCGGCTTCG ACAACTTCAA CATGGACCTG
ATGCACGGCC TGCCAGATCA GTCGCTGAAC GATGCGTTGG GTGACTTGCG CCAGGCCATC
GACCTGGGGC CAACGCACCT GTCCTGGTAC CAACTGACCG TGGAGCCAAA CACGGTGTTC
TGGAACCAAC CGCCGGAACT GCCCGAGGAC GACATTCTTT GGGACATTCA GGAGGCCGGC
CAGGCACTGA TGGCGGCGCA CGGATACAAG CAGTATGAGG TTTCGGCCTA TGCCCAGCCT
GGGCGTGCCG CCAAGCACAA CCTGAACTAC TGGTGCTTTG GCGATTTCAT CGGCATCGGC
GCCGGCGCCC ACGGTAAGCA GACCTTTGCC GACGGCCGCA TCCTGCGCAC CTGGAAGACC
CGCCTGCCCA AGGACTACCT GAACCTGGCC AAGCCGTTCA AGGCCGGCGA GAAGCTGCTG
CCGGTGGACG AGCTGCCGTT CGAGTTCTTG ATGAACGCAC TGCGCCTGAC AGATGGCGTG
GAAGCCGAGC TGTTCAGCCA GCGTACCGGC TTGCCGCTGG TGCAACTGGC TGAGGCCCGC
CGCGCCGCCG AACAAAAAGG GCTTTTGCAG GTCGAACCGG ATCGGCTGGT GGCCACGCCA
CGCGGCCAGT TGTTCCTCAA TGACCTGCTG CAGTATTTCT TGACCTAA
|
|---|
| Protein sequence | MIELLSTQPR QPGVAGFATL PPLALYIHIP WCVRKCPYCD FNSHAAGPDL PEEAYVDALL
TDLDQELPAV QGRPISSIFF GGGTPSLFSA NALGRLLRGV EQRIPFEPDI EITLEANPGT
FEQEKFKAYR QTGINRLSIG VQSFQPAKLQ ALGRIHNGDE AIRAAGMARA AGFDNFNMDL
MHGLPDQSLN DALGDLRQAI DLGPTHLSWY QLTVEPNTVF WNQPPELPED DILWDIQEAG
QALMAAHGYK QYEVSAYAQP GRAAKHNLNY WCFGDFIGIG AGAHGKQTFA DGRILRTWKT
RLPKDYLNLA KPFKAGEKLL PVDELPFEFL MNALRLTDGV EAELFSQRTG LPLVQLAEAR
RAAEQKGLLQ VEPDRLVATP RGQLFLNDLL QYFLT
|
|---|
| |