| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_0343 |
|---|
| Symbol | |
|---|
| ID | 6109123 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida W619 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010501 |
|---|
| Strand | - |
|---|
| Start bp | 361319 |
|---|
| End bp | 362917 |
|---|
| Gene Length | 1599 bp |
|---|
| Protein Length | 532 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641620100 |
|---|
| Product | glucose-methanol-choline oxidoreductase |
|---|
| Protein accession | YP_001747218 |
|---|
| Protein GI | 170719530 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTGTCA TCGACCCGTT TCGCCAAGGC CTCGAACGCG GCTGGATTAC CCATGATGGC
TCACGCCTGG AGCAGGACCT CAGCCTGCAA GCCGACATTG CCGTGATAGG CAGCGGTGCC
GGCGGCGCCA CCAGCGCGCA GATGCTCAGT GCCGCAGGCC TCAAGGTACT GCTGATCGAG
GAAGGCCCCC TCAAAACCAG CAGTGACTTC CACCTGCTAG AGAATGAGGC CTACGCCAGT
CTCTACCAGG AAGGCCTGGG CAGGATGAGC AAGGACGGCG CCATTACCAT TCTGCAGGGC
CGTGCGGTAG GCGGCACCAC GCTGGTCAAC TGGACCTCCA GCTTTCGCAC GCCCGCGCCG
ACCTTGGCCC ACTGGGCCAC GGCCCACAAC GTAAAAGGGC TGGACAAAGA CGCACTACGC
CCCTGGTTCG AACGCATCGA GCAAGACCTC GGGATTACCC CCTGGGCGGT GCCACCAAAC
GCCAACAACG ACGTACTGCG CCGTGGGTGT GAACAGCTCG GCTACCGATG GGCCGTAATT
GCGCGCAATG TCCGGGGGTG CTGGAACCTT GGCTATTGCG GCATGGGTTG CCCGGTCAAC
GCCAAACAAT CGATGCTGGT GACGCGCATT CCAGCCATGC TCGACAAGGG CGGCGAGCTG
CTGTACCTGG CCCGGGCCGA ACGCTTTGAG CATGACGGCG AGCGCATCGA GCATCTGCGC
TGCCAAGGGC TGGACGCACG AGGAATACAC ACCAACGGGC GCAGCATCAC TGTGCGCGCA
CGCCACTACA TCCTCGCAGG CGGTGGCATC AACAGCCCCG CCCTGCTGCT GCGCTCCAAG
GCTCCTGACC CCCACCAGTG CCTGGGCAAG CGGACTTTCC TGCACCTGGT CAACTTCAGC
GCGGCACGCT TCGAAGCACG CATCGACCCT TACTACGGCG CTCCGCAGTC CATCTACAGT
GACCACTTTC AATGGCAGGA CGGCGTCGAT GGCGCGGTCG GCTACAAACT TGAAGTACCG
CCCCTGCACC CGGCGCTGGC CAGCACCTTG CTCGGTGGCG ATGGTGTCGA AAATGCCCTG
CGCATGGCCG AGCTGCCGCA CACCCACGTC ATGCTTGCGC TGTTGCGCGA CGGTTTCCAC
CCAGAAAGCC CGGGCGGCAC GGTGGAACTG CGTGGCGATG GCTCACCGGT GCTCGATTAC
CAGGTCACCG ACTACTTGCG AGACGGCCTG CGCCGGGCCT TTCACAGCAT GGCCCAGATT
CAGTTCGCGG CGGGCGCCAC ACAGGTTACA CCCGCGCACA GCAGTGCCTG CGCGGCTACA
AGCCTGGCGC AGGCCCAACG CATGATCGAC GGCTTGCAGC TGGAGCCGTT CCATACGCGC
CTGGGCAGCG CCCACGTGAT GGGCGGCTGC GCAATGGGCG AAGACCCACG TCACGCGGTG
TGCGACAGCC TGGGCCGTCA CCATCAGCTG GAAAACCTGT CGATTCACGA CGGCTCGCTG
TTCCCGACCA GCATCGGTGC AAACCCGCAA CTGTCGGTCT ACGCCATCAG CGCGAAGCTC
ACCGACGCCC TGCTCTCCCG CCTGGCACAG AGTGCATGA
|
|---|
| Protein sequence | MPVIDPFRQG LERGWITHDG SRLEQDLSLQ ADIAVIGSGA GGATSAQMLS AAGLKVLLIE
EGPLKTSSDF HLLENEAYAS LYQEGLGRMS KDGAITILQG RAVGGTTLVN WTSSFRTPAP
TLAHWATAHN VKGLDKDALR PWFERIEQDL GITPWAVPPN ANNDVLRRGC EQLGYRWAVI
ARNVRGCWNL GYCGMGCPVN AKQSMLVTRI PAMLDKGGEL LYLARAERFE HDGERIEHLR
CQGLDARGIH TNGRSITVRA RHYILAGGGI NSPALLLRSK APDPHQCLGK RTFLHLVNFS
AARFEARIDP YYGAPQSIYS DHFQWQDGVD GAVGYKLEVP PLHPALASTL LGGDGVENAL
RMAELPHTHV MLALLRDGFH PESPGGTVEL RGDGSPVLDY QVTDYLRDGL RRAFHSMAQI
QFAAGATQVT PAHSSACAAT SLAQAQRMID GLQLEPFHTR LGSAHVMGGC AMGEDPRHAV
CDSLGRHHQL ENLSIHDGSL FPTSIGANPQ LSVYAISAKL TDALLSRLAQ SA
|
|---|
| |