| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_0327 |
|---|
| Symbol | |
|---|
| ID | 6109107 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida W619 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010501 |
|---|
| Strand | + |
|---|
| Start bp | 342520 |
|---|
| End bp | 343389 |
|---|
| Gene Length | 870 bp |
|---|
| Protein Length | 289 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641620084 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001747202 |
|---|
| Protein GI | 170719514 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | [TIGR03339] aminoethylphosphonate catabolism associated LysR family transcriptional regulator |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 0.621945 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTAAGTG CCGAGCTCAA AGCCTTCTAC ATGGTGGCCC GCCTGGGCAG CATCACCCTG
GCGGCAAAGA AACTTGGCCT CAGCCAGCCG ACGGTGACCA CCCAGATCCG CAACCTCGAA
AGCCAGTACG CGGTGGAGCT GTTCTACCGC GGCGGCCGAC GCCTGGTGCT GAGCGAGGAG
GGCGTGCGCC TGCTGCCGAT GGTCAAGGCG CTGCTGCAAC AGGAAGCTGA TATCGAGTTC
GAGCTGCGCA ACAGCGGCCA TGCCCAAGGC AACCTGCGCA TCGCTGCCAC CGCGCCGTAT
TACATCCTCG ACCTTGTGAA GATCTTCCGT GAGCGCTTGC CACAGGTGGG CGTGACCGTG
GAAATCGGCA ATTCGCAGCA GGTGCTGGAG ATGCTGGAGG ACTACCGCGT CGATGTCGCC
GCCTCTTCAC AGTTGGTGGA GGATGCTCGC CTGGTGAGGC GCGTGCTGGG CACTGACCCG
CTGGTGGTGG CGGTGCACCG CAATCATCCG CTGGCGCACC GTCAAGTGGT ATCTATCGAG
GTGGTGGCAG GGCAATGCCT GCTGATGCGC GAAAAAGGCT CGACCACGCG CAAGCTCACC
GAAGAAATGA TGCACGGCGC TGGGCTGAAG GCCGAAGCGG TGCTGGAAAT CGGCAGCCGC
GAGTCGATCC GTGAGGCGGT GCTGCGCAAT ATCGGCGTCA GCGTGATTGC CCGGCACGAG
GTGCCGCACA ACTCGGAGCT GCGGGTGCTG ACACTGGAAG ACGCGCCGGT GATGCATGAG
TACCTGTACT GCCTGAAGGA AAGACGCCAG GCCCGGTTGC CGGCAGCCTT TCTCGGTGTA
GCGCAAGAAG TGGTGGGGTC GCAGTTCTGA
|
|---|
| Protein sequence | MLSAELKAFY MVARLGSITL AAKKLGLSQP TVTTQIRNLE SQYAVELFYR GGRRLVLSEE
GVRLLPMVKA LLQQEADIEF ELRNSGHAQG NLRIAATAPY YILDLVKIFR ERLPQVGVTV
EIGNSQQVLE MLEDYRVDVA ASSQLVEDAR LVRRVLGTDP LVVAVHRNHP LAHRQVVSIE
VVAGQCLLMR EKGSTTRKLT EEMMHGAGLK AEAVLEIGSR ESIREAVLRN IGVSVIARHE
VPHNSELRVL TLEDAPVMHE YLYCLKERRQ ARLPAAFLGV AQEVVGSQF
|
|---|
| |