Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputW619_0179 |
Symbol | rph |
ID | 6108958 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida W619 |
Kingdom | Bacteria |
Replicon accession | NC_010501 |
Strand | + |
Start bp | 184470 |
End bp | 185192 |
Gene Length | 723 bp |
Protein Length | 240 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 641619935 |
Product | ribonuclease PH |
Protein accession | YP_001747054 |
Protein GI | 170719366 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0689] RNase PH |
TIGRFAM ID | [TIGR01966] ribonuclease PH |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.308415 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.00000767641 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGAAACGTC CAAGTGGTCG CGCCGCCGAT CAGCTCCGCT CGATCCGCAT CACCCGCAAC TACACCAAGC ACGCCGAAGG GTCGGTACTG GTCGAGTTCG GTGACACCAA GGTCATCTGC ACGGTCAGCG TTGAAAACGG TGTGCCGCGC TTCCTCAAAG GCCAGGGCCA AGGCTGGCTG ACCGCCGAGT ACGGCATGCT GCCGCGCTCC ACCGGTGAGC GTAACCAGCG TGAAGCCAGC CGTGGCAAGC AGGGTGGTCG CACCCTGGAA ATCCAGCGCC TGATCGGCCG CTCGCTGCGC GCCGCGCTGG ACATGAGCAA GCTGGGTGAC ATCACTTTGT ACGTCGACTG CGATGTGATC CAGGCCGATG GCGGCACCCG CACCGCGTCG ATCACCGGCG CCATGGTCGC CTTGGTCGAT GCCTTGGCAG TGATCAAGAA ACGTGGTGGC CTGAAGGCCG GCAATCCGCT CAAGCACATG ATCGCCGCCG TGTCGGTGGG TATGTACCAG GGCGAAGCCG TACTCGACCT GGACTATCTG GAAGACTCCG CTGCAGAGAC CGACCTGAAC GTGGTCATGA CCAGTGCCGG TGGTTTCATC GAAGTGCAGG GCACTGCAGA GGGTGCACCG TTCCAGCCCG AAGACTTCAA CGCCATGCTG GCGCTGGCGC AAAAGGGCAT GAACGAGATC TTCGAACTGC AGCAGGTCGC TCTGGCCGAC TGA
|
Protein sequence | MKRPSGRAAD QLRSIRITRN YTKHAEGSVL VEFGDTKVIC TVSVENGVPR FLKGQGQGWL TAEYGMLPRS TGERNQREAS RGKQGGRTLE IQRLIGRSLR AALDMSKLGD ITLYVDCDVI QADGGTRTAS ITGAMVALVD ALAVIKKRGG LKAGNPLKHM IAAVSVGMYQ GEAVLDLDYL EDSAAETDLN VVMTSAGGFI EVQGTAEGAP FQPEDFNAML ALAQKGMNEI FELQQVALAD
|
| |