Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputW619_0079 |
Symbol | glyS |
ID | 6109249 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida W619 |
Kingdom | Bacteria |
Replicon accession | NC_010501 |
Strand | - |
Start bp | 86475 |
End bp | 88526 |
Gene Length | 2052 bp |
Protein Length | 683 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641619835 |
Product | glycyl-tRNA synthetase subunit beta |
Protein accession | YP_001746954 |
Protein GI | 170719266 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0751] Glycyl-tRNA synthetase, beta subunit |
TIGRFAM ID | [TIGR00211] glycyl-tRNA synthetase, tetrameric type, beta subunit |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.248487 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.0000000000235888 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
| |
Sequence |
Gene sequence | ATGAGTGCTC AAGATTTCCT GGTAGAACTG GGCACCGAAG AGCTGCCACC CAAAGCCCTG GCCACCCTTG GTGACGCCTT CCTGGCCGGC ATCGAAAAAG GCCTGCAGGC CGCAGGCCTG AACTACACCG GTAAACAGGT GTACGCCGCG CCGCGTCGTC TGGCCGTGCT GATTCGCCAG CTGGATGTAC AGCAGCCTGA CCGCAGCATC AATATCGACG GCCCGCCCCT GCAGGCTGCC TTCAAGGACG GCGAGCCGAC CCAGGCTGCC TTGGGCTTTG CCAAGAAATG CGGGGTAGAG CTGTCGGAAA TCGACCAGAG TGGCGCCAAG CTGCGCTTCT CCCAGCATAT CCCGGGCAAG GCCACCGCCA GCCTGCTGCC GACCATCGTC GAAGATTCGC TCAACGACCT GCCGATCCCC AAGCGCATGC GCTGGGCCGC CAGCCGTGAA GAGTTCGTAC GCCCGACCCA GTGGCTGGTG ATGCTGCTGG GCGATCAGGT CGTCGACTGC ACCATCCTGT CGCAGCAGGC AGGCCGTGAA TCCCGTGGGC ACCGCTTCCA CCATCCGCAA AACGTGGTCA TCACCACCCC GGCCAACTAC GTCGAAGACC TGCGCAAAGC CTACGTGCTG GCCGACTTCG CCGAGCGCCG CGAACTGATT GCCAAGCGCA CCACCGAACT GGCAATGCAG CAGGAAGGTA CTGCGATCGT GCCGCCAGCG CTGCTGGATG AGGTGACTGC GCTGGTCGAG TGGCCGGTAC CGCTGGTGTG CTCGTTCGAG GAGCGTTTCC TCGAGGTGCC GCAGGAAGCC TTGATCACCA CCATGCAGGA CAACCAGAAG TACTTCTGCC TGCTGGACAG CGAAGGCAAG CTGCTGCCGC GCTTCATTAC CGTGGCCAAC GTCGAAAGCC GTGACCCCAA GCAGATCGTC TCGGGTAACG AGAAAGTCGT GCGCCCGCGC CTGACCGACG CCGAGTTCTT CTTCAAGCAG GACAAGAAGC AGCCGCTCGA AACCTTCAAC GAACGCCTGA AGAACGTAGT CTTCCAGGCG CAGTTGGGCA CCGTCTACGA CAAGGCCGAG CGCGTATCCC GGCTTGCCGC GTACATTGCT CCGCTGATCG GCGGTGACGC CCAGCGCGCT GGCCGTGCCG GGCTGCTGTC CAAGTGCGAC CTGGCCACCG AAATGGTCGG CGAATTCCCA GAGATGCAGG GCGTTGCCGG TTACTACTAC GCGCTCAACG ACGGCGAACC GCAAGACGTC GCCTTGGCGC TGAACGAGCA GTACATGCCG CGCGGTGCTG GCGCCGAGCT GCCGCAGACC CTGACCGGTG CTGCGGTGGC CATCGCCGAC AAACTCGACA CCCTGGTCGG TATCTTCGGC ATCGGCATGC TGCCCACCGG CAGCAAAGAC CCGTACGCCT TGCGCCGCGC GGCCCTGGGC GTGCTGCGTA TCCTGATCGA GAAGCAACTG GACCTGGACC TGACCCCTGC GGTCGAGTTC GCAGTCAAGC AGTTCGGTGC CAAGGTCAAG GCCGCCGGCC TGGCCGAGCA GGTGCTGGAG TTCATCTTCG ACCGCCTGCG TGCGCGCTAT GAAGACGAAG GCATCGACGT TGCCACCTAC CTGTCGGTAC GTGCCCTGAA GCCGGGTTCT GCCTTGGACT TCGACCAGCG CGTGCAGGCC GTGCAGGCCT TCCGCAAGCT GCCGGAAGCC GAGGCGCTGG CCGCAGTGAA CAAGCGTGTG TCGAACCTGC TGAGCAAAGC CGAAGGCGCC ATTGCCGAAC AGGTCGAGCC GAAGTACTTC GACAACGCCA ACGAGTTCTC GCTGTATTCG GCCATCCAGC AGGCCGACCA GGCTGTGCAA CCGATGGCAG CCGCACGTCA GTACAGCGAA TCGCTGGCCC GCCTGGCGGC CCTGCGTGAC CCGGTCGACG CCTTCTTCGA GGCAGTGATG GTCAACGCCG AGGACGCCAA GGTTCGCGCC AACCGTTATG CCCTGCTCAG CCGCCTGCGC GGCCTGTTCC TGGGCGTTGC CGACATTTCG CTGCTGGGGT AA
|
Protein sequence | MSAQDFLVEL GTEELPPKAL ATLGDAFLAG IEKGLQAAGL NYTGKQVYAA PRRLAVLIRQ LDVQQPDRSI NIDGPPLQAA FKDGEPTQAA LGFAKKCGVE LSEIDQSGAK LRFSQHIPGK ATASLLPTIV EDSLNDLPIP KRMRWAASRE EFVRPTQWLV MLLGDQVVDC TILSQQAGRE SRGHRFHHPQ NVVITTPANY VEDLRKAYVL ADFAERRELI AKRTTELAMQ QEGTAIVPPA LLDEVTALVE WPVPLVCSFE ERFLEVPQEA LITTMQDNQK YFCLLDSEGK LLPRFITVAN VESRDPKQIV SGNEKVVRPR LTDAEFFFKQ DKKQPLETFN ERLKNVVFQA QLGTVYDKAE RVSRLAAYIA PLIGGDAQRA GRAGLLSKCD LATEMVGEFP EMQGVAGYYY ALNDGEPQDV ALALNEQYMP RGAGAELPQT LTGAAVAIAD KLDTLVGIFG IGMLPTGSKD PYALRRAALG VLRILIEKQL DLDLTPAVEF AVKQFGAKVK AAGLAEQVLE FIFDRLRARY EDEGIDVATY LSVRALKPGS ALDFDQRVQA VQAFRKLPEA EALAAVNKRV SNLLSKAEGA IAEQVEPKYF DNANEFSLYS AIQQADQAVQ PMAAARQYSE SLARLAALRD PVDAFFEAVM VNAEDAKVRA NRYALLSRLR GLFLGVADIS LLG
|
| |