Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputW619_0061 |
Symbol | |
ID | 6109231 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida W619 |
Kingdom | Bacteria |
Replicon accession | NC_010501 |
Strand | - |
Start bp | 66091 |
End bp | 67341 |
Gene Length | 1251 bp |
Protein Length | 416 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 641619817 |
Product | RND family efflux transporter MFP subunit |
Protein accession | YP_001746936 |
Protein GI | 170719248 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR00999] Membrane Fusion Protein cluster 2 (function with RND porters) [TIGR01730] RND family efflux transporter, MFP subunit |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.00204779 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGGATAACA AACGCAAGAT CGCCCTCGCG GTAGCCGCTG TGGCAGCCCT CGGATTTGGC AGCCTTGCCT GGAACAACAG TTCCGGACAG CAGGCCGCCA GTACTGCCGA GCATGGCGCT AACGATGGCC ATGGCGACGA AAAGAAAGCC GCATCTGCCG CCAAAGAGGA AGGTGATGAG GGCCATGGTG AAGAAGGCCA CAGCGAAGAG GGCGGTGAAG AAGAGGGCAA GCTGACGCTC AGCGCTGAAC AGATCAAGGC CGCTGGTGTT GCCCTGGAAG CTGCAGCGCC TCGTGACCTC GGTACCGTCG TGAGCTTCCC TGGCGAAATT CGCTTCGACG AAGATCGTAC TGCCCACGTG GTTCCTCGTG TTCCTGGCGT TGTTGAGGCT GTCCAGGCCA ACCTGGGCGA GACGGTCAAG AAAGGGCAAG TCCTCGCGGT AATCGCCAGC CAGCAGATCT CTGACCTGCG CAGCGAACAA CAGGCCGCAC AGCGTCGCGT CGAACTGGCG CGTGTGACCT TCGAACGTGA GAAGCAACTG TGGCAGGACA AGATCTCTGC AGAGCAAGAC TACCTCCAAG CACGCCAAGC GCTGCAAGAA GCGGAGATCT CCTTGGCCAA CGCCAAGCAG AAGGTCGGCG CAATCGGTGC CTCGGTTAAC TCCGTTGGCG GTAATCGTTA CGAGCTCCGC GCTCCCTTCG ACGCCGTGGT AGTGGAGAAA CACCTGACCG TCGGCGAAGT CGTCAGCGAG GCGACCAACG CCTTCATCCT TTCCGACCTG AATCAGGTCT GGGCGACCTT CGCAGTTCCG CCGACAGATC TGGGCAAGGT CACGACTGGC CGTGCAGTGA AAGTCTCTTC GCCTGACATG AACGTCGAGG TCGAAGGGAA GGTGGGTTAT GTCGGCAGCC TGCTGGGCGA GCAAAACCGT GCAGCTACTG TCCGCGTCAC CTTGACCAAC CCCAACGGCG CCTGGCGTCC AGGCCTGTTC GTAAACATTG CGGTCACCTC CCAGACCGAT CGAGTTGCCG TAGCGGTCCC TGAGCACGCT GTGCAGACCG TTGAAGACAA ACCTTCGGTA TTCGTACGCA CCCCAGATGG CTTTGACACC CGCCCGGTAA AACTGGGTCG CCGCGACAAT GGGTACGTGG AAATCATCGA CGGTATTGAA GCCGGCGCCC AGGTAGCAAC CAGTGGCAGC TTCACACTCA AGTCCGAGCT CGGCAAAGCT TCTGCCGAAC ACGGTCACTG A
|
Protein sequence | MDNKRKIALA VAAVAALGFG SLAWNNSSGQ QAASTAEHGA NDGHGDEKKA ASAAKEEGDE GHGEEGHSEE GGEEEGKLTL SAEQIKAAGV ALEAAAPRDL GTVVSFPGEI RFDEDRTAHV VPRVPGVVEA VQANLGETVK KGQVLAVIAS QQISDLRSEQ QAAQRRVELA RVTFEREKQL WQDKISAEQD YLQARQALQE AEISLANAKQ KVGAIGASVN SVGGNRYELR APFDAVVVEK HLTVGEVVSE ATNAFILSDL NQVWATFAVP PTDLGKVTTG RAVKVSSPDM NVEVEGKVGY VGSLLGEQNR AATVRVTLTN PNGAWRPGLF VNIAVTSQTD RVAVAVPEHA VQTVEDKPSV FVRTPDGFDT RPVKLGRRDN GYVEIIDGIE AGAQVATSGS FTLKSELGKA SAEHGH
|
| |