| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_4884 |
|---|
| Symbol | mdtM |
|---|
| ID | 6145422 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | - |
|---|
| Start bp | 5000391 |
|---|
| End bp | 5001623 |
|---|
| Gene Length | 1233 bp |
|---|
| Protein Length | 410 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 641619688 |
|---|
| Product | multidrug resistance protein MdtM |
|---|
| Protein accession | YP_001746795 |
|---|
| Protein GI | 170681905 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.800167 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 48 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCACGTT TTTTTGCCCG CCATGCCGCC ACGCTGTTTT TCCCGATGGC GTTGATTTTG
TATGACTTTG CTGCGTATCT GTCGACGGAC CTGATCCAGC CAGGGATCAT TAATGTGGTC
CGTGATTTTA ATGCCGATGT CAGTCTGGCC CCGGCTGCCG TCAGTCTCTA TCTCGCTGGA
GGCATGGCAT TGCAGTGGCT GCTGGGGCCG CTTTCCGACA GGATTGGCCG CAGGCCGGTG
CTGATTAACG GGGCGTTAAT TTTTACCCTT GCCTGCGCCG CGACAATGTT CACCACGTCA
ATGACACAAT TTCTTATCGC GCGTGCAATT CAGGGCACCA GTATCTGTTT TATTGCCACC
GTTGGTTATG TCACGGTGCA GGAGGCGTTC GGACAGACAA AAGGGATCAA GTTGATGGCG
ATTATCACCT CCATCGTACT GATTGCGCCG ATTATCGGCC CGCTTTCCGG CGCAGCTCTG
ATGCACTTTA TGCACTGGAA AGTCCTTTTT GCCATCATTG CGGTTATGGG TTTTATCTCA
TTTGTTGGCT TACTGTTGGC GATGCCAGAG ACGGTGAAGC GCGGCGCGGT TCCGTTTAGC
GCCAAAAGCG TCTTGCGCGA TTTTCGTAAT GTCTTTTGCA ATCGGCTGTT CCTCTTTGGC
GCAGCAACCA TCTCTTTAAG CTATATCCCG ATGATGAGTT GGGTGGCTGT CTCGCCGGTG
ATCCTGATTG ACGCAGGCGG CTTAACGACC TCGCAGTTCG CCTGGACACA GGTTCCGGTG
TTCGGCGCGG TGATTGTTGC GAATGCCATC GTGGCGCGTT TCGTTAAAGA TCCGACCGAA
CCGCGGTTTA TCTGGCGTGC CGTGCCCATT CAACTGGCCG GCCTCGCACT GTTGATTGTC
GGCAATTTGC TGTCGCCACA CGTCTGGCTG TGGTCGGTGC TGGGCACCAG TCTGTATGCT
TTCGGGATTG GTTTGATTTT CCCGACCTTA TTCCGCTTTA CGCTGTTTTC CAATAACTTA
CCGAAAGGGA CCGTCTCCGC ATCGCTAAAT ATGGTGATCC TGATGGTGAT GTCGGTCTCG
GTCGAAATCG GCCGCTGGCT GTGGTTTAAC GGCGGTCGCT TGCCGTTTCA TCTGTTAGCC
GTTTTAGCGG GCGTTATCGT CGTTTTCACC CTGGCGGGAT TGCTCAATCG CGTGCGCCAG
CATCAGGCTG CCGAGCTGGC GGAGGAGCGG TGA
|
|---|
| Protein sequence | MPRFFARHAA TLFFPMALIL YDFAAYLSTD LIQPGIINVV RDFNADVSLA PAAVSLYLAG
GMALQWLLGP LSDRIGRRPV LINGALIFTL ACAATMFTTS MTQFLIARAI QGTSICFIAT
VGYVTVQEAF GQTKGIKLMA IITSIVLIAP IIGPLSGAAL MHFMHWKVLF AIIAVMGFIS
FVGLLLAMPE TVKRGAVPFS AKSVLRDFRN VFCNRLFLFG AATISLSYIP MMSWVAVSPV
ILIDAGGLTT SQFAWTQVPV FGAVIVANAI VARFVKDPTE PRFIWRAVPI QLAGLALLIV
GNLLSPHVWL WSVLGTSLYA FGIGLIFPTL FRFTLFSNNL PKGTVSASLN MVILMVMSVS
VEIGRWLWFN GGRLPFHLLA VLAGVIVVFT LAGLLNRVRQ HQAAELAEER
|
|---|
| |