| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_4718 |
|---|
| Symbol | nrdD |
|---|
| ID | 6143559 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | - |
|---|
| Start bp | 4815742 |
|---|
| End bp | 4817880 |
|---|
| Gene Length | 2139 bp |
|---|
| Protein Length | 712 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 641619534 |
|---|
| Product | anaerobic ribonucleoside triphosphate reductase |
|---|
| Protein accession | YP_001746642 |
|---|
| Protein GI | 170681280 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG1328] Oxygen-sensitive ribonucleoside-triphosphate reductase |
|---|
| TIGRFAM ID | [TIGR02487] anaerobic ribonucleoside-triphosphate reductase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 50 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACACCGC ATGTGATGAA ACGAGACGGC TGCAAAGTGC CGTTTAAATC AGAGCGCATC
AAAGAAGCGA TTCTGCGTGC AGCTAAAGCA GCGGAAGTCG ATGATGCCGA TTATTGCGCC
ACTGTTGCTG CGGTTGTCAG CGAGCAGATG CAGGGCCGCA ACCAGGTGGA TATCAATGAG
ATCCAGACCG CAGTTGAAAA CCAGCTGATG TCGGGGCCAT ACAAACAACT GGCTCGTGCT
TACATCGAGT ACCGTCACGA TCGCGACATT GAACGTGAAA AACGCGGTCG CCTGAACCAG
GAGATCCGTG GTCTGGTCGA GCAGACCAAC TCCTCGTTAC TCAACGAAAA CGCCAACAAA
GACAGCAAGG TGATTCCAAC CCAGCGCGAC CTGCTGGCCG GGATCGTGGC TAAACACTAT
GCACGCCAGC ACTTGCTGCC GCGTGACGTG GTGCAGGCAC ATGAGCGTGG CGATATTCAC
TATCACGATC TCGATTACTC GCCGTTCTTC CCGATGTTCA ACTGCATGTT GATCGACCTG
AAAGGCATGC TGACCCAGGG CTTTAAGATG GGGAACGCCG AGATTGAACC GCCGAAGTCG
ATCTCTACGG CAACCGCGGT AACTGCGCAG ATTATTGCTC AGGTCGCCAG CCATATTTAT
GGCGGCACCA CCATTAACCG TATCGATGAA GTGCTGGCAC CGTTTGTCAC CGCCAGCTAC
AACAAACATC GCAAGACCGC GGAAGAGTGG AACATCCCGG ACGCCGAAGG CTACGCTAAC
TCTCGTACCA TCAAAGAGTG CTACGATGCC TTCCAGTCGC TGGAGTACGA AGTAAACACC
CTGCATACCG CCAACGGTCA AACGCCGTTT GTAACCTTTG GTTTTGGTCT GGGCACCAGC
TGGGAATCGC GCCTGATTCA GGAATCGATC CTGCGTAACC GTATCGCAGG CCTCGGTAAA
AACCGTAAAA CGGCGGTGTT CCCGAAACTG GTGTTTGCGA TTCGCGATGG CCTGAACCAT
AAAAAAGGCG ATCCGAACTA CGACATCAAA CAGCTGGCGC TGGAGTGCGC AAGCAAGCGC
ATGTATCCGG ATATCCTGAA CTACGATCAG GTAGTGAAAG TCACCGGTTC GTTTAAAACC
CCGATGGGCT GCCGCAGCTT CCTCGGCGTG TGGGAAAATG AAAACGGCGA GCAGATCCAC
GATGGTCGTA ACAACCTCGG CGTGATCAGC CTGAACCTGC CGCGTATTGC TCTGGAGGCA
AAAGGCGATG AAGCCACCTT CTGGAAGCTG CTGGATGAAC GTCTGGTGCT GGCACGTAAG
GCGCTGATGA CCCGTATCGC TCGTCTCGAA GGCGTGAAAG CGCGCGTAGC CCCGATCCTC
TATATGGAAG GTGCTTGTGG CGTGCGTCTG AATGCTGACG ATGATGTTTC TGAAATCTTC
AAAAACGGTC GTGCGTCTAT TTCGCTGGGT TACATCGGCA TCCACGAAAC CATTAACGCG
CTGTTTGGCG GCGAGCATGT GTATGACAAC GAGCAGCTGC GCGCGAAAGG TATCGCCATT
GTTGAACGTC TGCGTCAGGC GGTGGATCAG TGGAAAGAAG AAACGGGTTA CGGTTTTAGC
CTTTACAGCA CGCCAAGTGA AAACCTGTGC GACCGCTTCT GCCGTCTCGA TACCGCTGAG
TTTGGCGTGG TGCCGGGCGT GACTGATAAA GGTTACTACA CCAACAGTTT CCACCTCGAT
GTGGAGAAGA AGGTGAACCC GTACGACAAG ATCGACTTTG AAGCGCCTTA CCCGCCGCTG
GCGAACGGTG GTTTCATTTG CTACGGCGAA TATCCAAACA TTCAGCACAA CCTGAAGGCG
CTGGAAGATG TCTGGGATTA CAGCTATCAG CATGTACCGT ATTACGGCAC CAATACGCCG
ATTGATGAGT GTTACGAGTG TGGTTTTACC GGTGAGTTTG AGTGCACCAG TAAAGGCTTC
ACCTGCCCGA AATGTGGTAA CCATGACGCC TCCCGTGTGT CGGTGACTCG CCGCGTGTGC
GGATATTTAG GTAGCCCGGA TGCGCGTCCG TTTAACGCTG GTAAGCAGGA AGAAGTTAAG
CGCCGCGTTA AACATTTGGG GAATGGGCAG ATAGGTTAA
|
|---|
| Protein sequence | MTPHVMKRDG CKVPFKSERI KEAILRAAKA AEVDDADYCA TVAAVVSEQM QGRNQVDINE
IQTAVENQLM SGPYKQLARA YIEYRHDRDI EREKRGRLNQ EIRGLVEQTN SSLLNENANK
DSKVIPTQRD LLAGIVAKHY ARQHLLPRDV VQAHERGDIH YHDLDYSPFF PMFNCMLIDL
KGMLTQGFKM GNAEIEPPKS ISTATAVTAQ IIAQVASHIY GGTTINRIDE VLAPFVTASY
NKHRKTAEEW NIPDAEGYAN SRTIKECYDA FQSLEYEVNT LHTANGQTPF VTFGFGLGTS
WESRLIQESI LRNRIAGLGK NRKTAVFPKL VFAIRDGLNH KKGDPNYDIK QLALECASKR
MYPDILNYDQ VVKVTGSFKT PMGCRSFLGV WENENGEQIH DGRNNLGVIS LNLPRIALEA
KGDEATFWKL LDERLVLARK ALMTRIARLE GVKARVAPIL YMEGACGVRL NADDDVSEIF
KNGRASISLG YIGIHETINA LFGGEHVYDN EQLRAKGIAI VERLRQAVDQ WKEETGYGFS
LYSTPSENLC DRFCRLDTAE FGVVPGVTDK GYYTNSFHLD VEKKVNPYDK IDFEAPYPPL
ANGGFICYGE YPNIQHNLKA LEDVWDYSYQ HVPYYGTNTP IDECYECGFT GEFECTSKGF
TCPKCGNHDA SRVSVTRRVC GYLGSPDARP FNAGKQEEVK RRVKHLGNGQ IG
|
|---|
| |