| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_4544 |
|---|
| Symbol | |
|---|
| ID | 6144744 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | - |
|---|
| Start bp | 4645172 |
|---|
| End bp | 4646638 |
|---|
| Gene Length | 1467 bp |
|---|
| Protein Length | 488 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 641619360 |
|---|
| Product | putative outer membrane efflux protein MdtP |
|---|
| Protein accession | YP_001746472 |
|---|
| Protein GI | 170681660 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 65 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCAATC GTCAACTTTC ACGCCTGCTG TTGTGCAGCA TTCTCGGCAG CACGACGCTG
ATTTCCGGCT GTGCCCTGGT ACGTAAGGAT TCTGCGCCTC ATCAACAGCT CAAACCGGAA
CAAATCAAAC TGGCCGATGA TATTCATCTT GCCAGCTCCG GCTGGCCGCA GGCGCAGTGG
TGGAAACAAC TCAATGACCC GCAGTTGGAT GCTTTGATCC AACGGACGCT AAGTGGTTCA
CACACCCTCG CCGAAGCGAA ACTGCGGGAA GAAAAAGCGC AATCGCAGGC CGATTTGTTA
GATGCCGGTT CACAGTTGCA GGTGGCAGCG TTAGGGATGC TTAACCGCCA ACGCGTCTCG
GCGAACGGCT TTTTAAGCCC TTATGCGATG GATGCGCCCG CACTGGGGAT GGACGGGCCG
TACTATACGG AAGCCACAGT AGGTTTGTTT GCCGGACTGG ATCTCGATTT GTGGGGTGTG
CATCGCTCAG CGGTTGCCGC CGCCATTGGC GCGCATAATG CAGCGCTGGC AGAAACCGCA
GCAGTAGAGC TATCGCTGAC CACGGGCGTA GCGCAGCTTT ATTACAGTAT GCAGGCCAGC
TATCAGATGC TCGATCTGTT AGAACAAACA CGCGATGTGA TTGATTACGC GGTGAAAGCG
CACCAAAGTA AAGTGGCGCA CGGTCTGGAA GCGCAAGTGC CTTTCCACGG CGCGCGGGCG
CAAATTCTGG CCGTCGATAA ACAAATTGCC GCCGTCAAAG GGCAAATCAC TGAAACGCGG
GAATCTCTGC GCGCATTGAT TGGCGCGGGC GCCAGCGATA TGCCGGAGAT CAAACCGGTG
GCATTACCGC GAGTCCAGAC CGGCATTCCG GCAACACTCT CTTATGAGTT GCTCGCCAGA
CGCCCGGATC TGCAAGCCAT GCGCTGGTAT GTTCAGGCGT CATTAGATCA GGTGGATTCC
GCGCGGGCGC TGTTCTATCC GAGCTTTGAT ATCAAAGCGT TTTTCGGCCT GGATTCTATC
CACCTGGATA CCTTATTCAA AAAAACCAGT CGCCAGTTCA ACTTTATCCC AGGTCTGAAA
TTGCCGCTGT TTGACGGTGG ACGGTTGAAT GCCAATCTCG AAGGCACGCG CGCCGCCAGC
AACATGATGA TTGAACGTTA CAACCAGTCA GTACTGAACG CGGTGCGCGA CGTTGCCGTC
AACGGCACGC GTCTGCAAAC GCTTAACGAC GAGCGAGAGA TGCAGGCTGA ACGCGTGGAA
GCAACGCGCT TCACCCAGCG CGCTGCCGAG GCCGCCTATC AACGCGGCTT AACCAGCCGC
TTACAGGCCA CCGAAGCCCG GTTGCCAGTG CTTGCCGAGG AGATGTCATT ACTGATGCTG
GACAGCCGCC GGGTGATCCA AAGCATTCAG TTGATGAAAT CGCTGGGCGG CGGGTATCAG
GCGGCTCCCG TCGTCGAGAA AAAATAA
|
|---|
| Protein sequence | MINRQLSRLL LCSILGSTTL ISGCALVRKD SAPHQQLKPE QIKLADDIHL ASSGWPQAQW
WKQLNDPQLD ALIQRTLSGS HTLAEAKLRE EKAQSQADLL DAGSQLQVAA LGMLNRQRVS
ANGFLSPYAM DAPALGMDGP YYTEATVGLF AGLDLDLWGV HRSAVAAAIG AHNAALAETA
AVELSLTTGV AQLYYSMQAS YQMLDLLEQT RDVIDYAVKA HQSKVAHGLE AQVPFHGARA
QILAVDKQIA AVKGQITETR ESLRALIGAG ASDMPEIKPV ALPRVQTGIP ATLSYELLAR
RPDLQAMRWY VQASLDQVDS ARALFYPSFD IKAFFGLDSI HLDTLFKKTS RQFNFIPGLK
LPLFDGGRLN ANLEGTRAAS NMMIERYNQS VLNAVRDVAV NGTRLQTLND EREMQAERVE
ATRFTQRAAE AAYQRGLTSR LQATEARLPV LAEEMSLLML DSRRVIQSIQ LMKSLGGGYQ
AAPVVEKK
|
|---|
| |