Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcSMS35_4446 |
Symbol | nfi |
ID | 6142741 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli SMS-3-5 |
Kingdom | Bacteria |
Replicon accession | NC_010498 |
Strand | + |
Start bp | 4543321 |
End bp | 4543992 |
Gene Length | 672 bp |
Protein Length | 223 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 641619266 |
Product | endonuclease V |
Protein accession | YP_001746382 |
Protein GI | 170681451 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1515] Deoxyinosine 3'endonuclease (endonuclease V) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 0.000793274 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGATCTCG CGTCATTACG CGCTCAACAA ATTGAACTGG CTTCTTCTGT GATCCGCGAG GATCGACTCG ATAAAGATCC GCCGGATCTG ATCGCCGGAG CCGATGTCGG ATTTGAGCAG GGCGGAGAAG TGACGCGAGC GGCGATGGTG CTGCTGAAAT ACCCCTCGCT TGAGCTGGTG GAGTATAAAG TGGCCCGCAT CGCCACCACC ATGCCTTACA TTCCAGGTTT TCTCTCCTTC CGCGAATATC CTGCGCTGCT GGCAGCGTGG GAGATGCTGT CACAAAAGCC GGATTTAGTG TTTGTCGATG GTCACGGGAT CTCGCATCCT CGCCGTCTTG GCGTTGCCAG CCACTTTGGT TTGCTGGTGG ATGTGCCGAC CATTGGCGTG GCGAAAAAAC GGCTCTGCGG TAAATTCGAA CCGCTCTCCA GCGAACCGGG CGCGCTGGCC CCACTGATGG ATAAAGGCGA GCAGCTGGCC TGGGTCTGGC GCAGCAAAGC GCGCTGTAAC CCGTTGTTTA TCGCTACCGG TCATCGGGTC AGCGTGGACA GCGCGCTGGC GTGGGTACAA CGCTGCATGA AAGGCTATCG TCTGCCGGAG CCAACGCGCT GGGCGGACGC GGTGGCCTCG GAACGTCCGG CGTTCGTGCG CTATACAGCA AATCAGCCCT AA
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Protein sequence | MDLASLRAQQ IELASSVIRE DRLDKDPPDL IAGADVGFEQ GGEVTRAAMV LLKYPSLELV EYKVARIATT MPYIPGFLSF REYPALLAAW EMLSQKPDLV FVDGHGISHP RRLGVASHFG LLVDVPTIGV AKKRLCGKFE PLSSEPGALA PLMDKGEQLA WVWRSKARCN PLFIATGHRV SVDSALAWVQ RCMKGYRLPE PTRWADAVAS ERPAFVRYTA NQP
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