| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_4363 |
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| Symbol | uspD |
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| ID | 6146591 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | + |
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| Start bp | 4450721 |
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| End bp | 4451149 |
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| Gene Length | 429 bp |
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| Protein Length | 142 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 641619184 |
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| Product | universal stress protein UspD |
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| Protein accession | YP_001746308 |
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| Protein GI | 170683094 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0589] Universal stress protein UspA and related nucleotide-binding proteins |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | 46 |
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| Fosmid unclonability p-value | 0.54659 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCTTATA AACACATTGG CGTGGCAATT TCCGGGAATG AAGAAGATGC CTTACTGGTG
AATAAAGCCC TGGAGCTCGC CAGACATAAT GACGCTCACC TGACGTTAAT TCATATTGAT
GATGGCTTAA GCGAGTTGTA TCCGGGTATC TACTTCCCTG CAACAGAAGA TATTCTTCAA
TTGTTGAAGA ATAAGTCGGA TAACAAGCTG TATAAACTGA CGAAAAATAT TCAATGGCCG
AAGACAAAAC TGCGTATTGA ACGCGGAGAA ATGCCGGAAA CACTGCTGGA AATTATGCAA
AAAGAGCAGT GCGACCTCCT TGTCTGTGGT CATCACCACT CATTTATCAA CCGTTTGATG
CCGGCATATC GCGGGATGAT CAATAAGTTG AGTGCGGATT TGCTCATCGT GCCGTTTATC
GATAAGTAA
|
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| Protein sequence | MAYKHIGVAI SGNEEDALLV NKALELARHN DAHLTLIHID DGLSELYPGI YFPATEDILQ
LLKNKSDNKL YKLTKNIQWP KTKLRIERGE MPETLLEIMQ KEQCDLLVCG HHHSFINRLM
PAYRGMINKL SADLLIVPFI DK
|
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