| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_4222 |
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| Symbol | rfaH |
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| ID | 6143458 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | - |
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| Start bp | 4319569 |
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| End bp | 4320057 |
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| Gene Length | 489 bp |
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| Protein Length | 162 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 641619046 |
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| Product | transcriptional activator RfaH |
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| Protein accession | YP_001746174 |
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| Protein GI | 170682425 |
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| COG category | [K] Transcription |
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| COG ID | [COG0250] Transcription antiterminator |
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| TIGRFAM ID | [TIGR01955] transcriptional activator RfaH |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 0.00601937 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGCAATCCT GGTATTTACT GTACTGCAAG CGCGGGCAAC TTCAACGTGC CCAGGAACAC
CTCGAAAGAC AGGCTGTGAA TTGCCTGGCA CCGATGATCT CCCTGGAAAA AATCGTGCGT
GGCAAACGTA CTGCAGTCAG TGAGCCATTG TTCCCCAACT ACTTGTTTGT GGAGTTCGAT
CCGGAAGTGA TTCATACCAC GACTATCAAC GCGACCCGCG GTGTCAGCCA CTTCGTGCGC
TTTGGCGCGT CGCCAGCGAT AGTCCCATCG GCGGTGATTC ATCAGCTATC GGTATATAAA
CCGAAAGACA TTGTCGATCC GGCAACCCCT TATCCGGGTG ATAAGGTGAT TATTACCGAA
GGCGCGTTCG AAGGTTTTCA GGCCATTTTC ACCGAACCCG ACGGCGAGGC TCGCTCCATG
CTGTTACTTA ATCTTATCAA TAAAGAGATT AAGCACAGTG TGAAGAACAC CGAGTTCCGC
AAACTCTAA
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| Protein sequence | MQSWYLLYCK RGQLQRAQEH LERQAVNCLA PMISLEKIVR GKRTAVSEPL FPNYLFVEFD
PEVIHTTTIN ATRGVSHFVR FGASPAIVPS AVIHQLSVYK PKDIVDPATP YPGDKVIITE
GAFEGFQAIF TEPDGEARSM LLLNLINKEI KHSVKNTEFR KL
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