| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_4170 |
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| Symbol | hemC |
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| ID | 6142678 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | - |
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| Start bp | 4269468 |
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| End bp | 4270424 |
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| Gene Length | 957 bp |
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| Protein Length | 318 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 641618993 |
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| Product | porphobilinogen deaminase |
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| Protein accession | YP_001746121 |
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| Protein GI | 170680193 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0181] Porphobilinogen deaminase |
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| TIGRFAM ID | [TIGR00212] porphobilinogen deaminase |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 44 |
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| Fosmid unclonability p-value | 0.473943 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGGTAA CAAGCATGTT AGACAATGTT TTAAGAATTG CCACACGCCA AAGCCCACTT
GCACTCTGGC AGGCACACTA TGTCAAAGAC AAGTTGATGG CGAGCCATCC GGGCCTGGTC
GTTGAACTGG TACCGATGGT GACGCGCGGC GATGTGATTC TTGATACGCC GCTGGCGAAA
GTAGGCGGAA AAGGCTTATT TGTTAAAGAG CTGGAAGTCG CGCTCCTGGA GAATCGCGCC
GATATCGCCG TACATTCAAT GAAAGATGTG CCGGTTGAAT TCCCGCAAGG TCTGGGGCTG
GTCACCATTT GCGAGCGTGA AGATCCTCGC GATGCCTTTG TGTCCAATAA CTATGAAAGT
CTGGATGCGT TACCGGCAGG CAGTATCGTC GGGACGTCCA GTTTACGTCG CCAGTGCCAA
CTGGCTGAAC GCCGCCCGGA TCTGATTATC CGCTCCCTGC GCGGCAACGT CGGCACTCGC
CTGAGTAAAC TGGATAACGG CGAATACGAT GCCATCATTC TTGCCGTAGC CGGACTAAAA
CGTTTAGGTC TGGAGTCCCG CATTCGCGCC GCATTGCCAC CCGAGATTTC TCTTCCGGCG
GTAGGACAAG GTGCGGTGGG TATTGAATGC CGCCTTGATG ATTCTCGCAC TCGCGAGCTG
CTTGCCGCGC TGAATCACCA CGAAACTGCA CTGCGCGTTA CCGCAGAACG CGCCATGAAT
ACCCGTCTCG AAGGCGGATG TCAGGTGCCA ATTGGTAGCT ACGCCGAGCT TATTGATGGC
GAAATCTGGC TGCGTGCGCT GGTCGGCGCG CCGGACGGTT CGCAGATTAT TCGCGGTGAA
CGCCGCGGTG CGCCGCAAGA TGCCGAACAA ATGGGGATTT CGCTGGCAGA AGAGCTACTG
AATAACGGCG CGCGCGAGAT CCTCGCTGAA GTCTATAACG GAGACGCCCC GGCATGA
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| Protein sequence | MTVTSMLDNV LRIATRQSPL ALWQAHYVKD KLMASHPGLV VELVPMVTRG DVILDTPLAK
VGGKGLFVKE LEVALLENRA DIAVHSMKDV PVEFPQGLGL VTICEREDPR DAFVSNNYES
LDALPAGSIV GTSSLRRQCQ LAERRPDLII RSLRGNVGTR LSKLDNGEYD AIILAVAGLK
RLGLESRIRA ALPPEISLPA VGQGAVGIEC RLDDSRTREL LAALNHHETA LRVTAERAMN
TRLEGGCQVP IGSYAELIDG EIWLRALVGA PDGSQIIRGE RRGAPQDAEQ MGISLAEELL
NNGAREILAE VYNGDAPA
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