Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcSMS35_4118 |
Symbol | rbsC |
ID | 6146643 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli SMS-3-5 |
Kingdom | Bacteria |
Replicon accession | NC_010498 |
Strand | + |
Start bp | 4215087 |
End bp | 4216052 |
Gene Length | 966 bp |
Protein Length | 321 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 641618942 |
Product | ribose ABC transporter permease protein |
Protein accession | YP_001746080 |
Protein GI | 170683105 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1172] Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 39 |
Fosmid unclonability p-value | 0.129793 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACAACCC AGACTGTCTC TGGTCGCCGT TATTTCACGA AAGCGTGGCT GATGGAGCAG AAATCGCTTA TCGCTCTGCT GGTGCTGATC GCGATTGTCT CGACGTTAAG CCCGAACTTT TTCACCATCA ATAACTTATT CAATATTCTC CAGCAAACCT CGGTGAACGC CATTATGGCA GTCGGGATGA CGCTGGTGAT CCTGACGTCG GGCATCGACT TGTCGGTAGG TTCTCTATTG GCGCTGACCG GCGCAGTTGC TGCATCTATC GTTGGCATTG AAGTCAATGC GCTGGTGGCT GTCGCTGCCG CTCTCGCGTT AGGTGCCGCA ATTGGTGCGG TAACCGGGGT GATTGTAGCG AAAGGTCGCG TCCAGGCCTT TATCGCTACG CTGGTTATGA TGCTTTTACT GCGCGGCGTG ACCATGGTTT ATACCAACGG TAGCCCAGTG AATACTGGCT TTACTGAGAA CGCCGATCTG TTTGGCTGGT TTGGTATTGG TCGTCCGCTG GGTGTACCGA CGCCAGTCTG GATCATGGGA ATTGTCTTCC TCGCGGCCTG GTACATGCTG CATCACACGC GTCTGGGGCG TTACATCTAC GCGCTGGGCG GCAACGAAGC GGCAACGCGC CTTTCTGGTA TCAACGTCAA TAAAATCAAA ATCATCGTCT ATTCTCTTTG TGGTCTGCTG GCATCGCTGG CCGGGATCAT TGAAGTGGCG CGTCTCTCCT CCGCACAACC TACGGCGGGG ACTGGCTATG AGCTGGATGC CATTGCTGCG GTGGTTCTGG GCGGTACGAG TCTGGCGGGC GGAAAAGGTC GCATTGTTGG GACGTTGATC GGCGCATTAA TTCTTGGCTT CCTTAATAAT GGATTGAATT TGTTAGGTGT TTCCTCCTAT TACCAGATGA TCGTCAAAGC GGTGGTGATT TTGCTGGCGG TGCTGGTAGA CAACAAAAAG CAGTAA
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Protein sequence | MTTQTVSGRR YFTKAWLMEQ KSLIALLVLI AIVSTLSPNF FTINNLFNIL QQTSVNAIMA VGMTLVILTS GIDLSVGSLL ALTGAVAASI VGIEVNALVA VAAALALGAA IGAVTGVIVA KGRVQAFIAT LVMMLLLRGV TMVYTNGSPV NTGFTENADL FGWFGIGRPL GVPTPVWIMG IVFLAAWYML HHTRLGRYIY ALGGNEAATR LSGINVNKIK IIVYSLCGLL ASLAGIIEVA RLSSAQPTAG TGYELDAIAA VVLGGTSLAG GKGRIVGTLI GALILGFLNN GLNLLGVSSY YQMIVKAVVI LLAVLVDNKK Q
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