| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_4104 |
|---|
| Symbol | atpF |
|---|
| ID | 6144071 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | - |
|---|
| Start bp | 4200217 |
|---|
| End bp | 4200687 |
|---|
| Gene Length | 471 bp |
|---|
| Protein Length | 156 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 641618928 |
|---|
| Product | F0F1 ATP synthase subunit B |
|---|
| Protein accession | YP_001746066 |
|---|
| Protein GI | 170680530 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0711] F0F1-type ATP synthase, subunit b |
|---|
| TIGRFAM ID | [TIGR01144] ATP synthase, F0 subunit b |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.000546623 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 0.0856146 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAATCTTA ACGCAACAAT CCTCGGCCAG GCCATCGCGT TTGTCCTGTT CGTTCTGTTC
TGCATGAAGT ACGTATGGCC GCCATTAATG GCAGCCATCG AAAAACGTCA AAAAGAAATT
GCTGACGGCC TTGCTTCCGC AGAACGAGCA CATAAGGACC TTGACCTTGC AAAGGCCAGC
GCGACCGACC AGCTGAAAAA AGCGAAAGCG GAAGCCCAGG TAATCATCGA GCAGGCGAAC
AAACGCCGCT CGCAGATTCT GGACGAAGCT AAAGCTGAAG CAGAGCAGGA ACGTACTAAA
ATCGTGGCCC AGGCGCAGGC GGAAATTGAA GCCGAGCGTA AACGTGCCCG TGAAGAGCTG
CGTAAGCAAG TTGCTATCCT GGCTGTTGCT GGCGCCGAGA AGATCATCGA ACGTTCCGTG
GATGAAGCTG CTAACAGCGA CATCGTGGAT AAACTTGTCG CTGAACTGTA A
|
|---|
| Protein sequence | MNLNATILGQ AIAFVLFVLF CMKYVWPPLM AAIEKRQKEI ADGLASAERA HKDLDLAKAS
ATDQLKKAKA EAQVIIEQAN KRRSQILDEA KAEAEQERTK IVAQAQAEIE AERKRAREEL
RKQVAILAVA GAEKIIERSV DEAANSDIVD KLVAEL
|
|---|
| |