| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_4048 |
|---|
| Symbol | |
|---|
| ID | 6146725 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | - |
|---|
| Start bp | 4141377 |
|---|
| End bp | 4143038 |
|---|
| Gene Length | 1662 bp |
|---|
| Protein Length | 553 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 641618874 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001746012 |
|---|
| Protein GI | 170683682 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2985] Predicted permease |
|---|
| TIGRFAM ID | [TIGR01625] AspT/YidE/YbjL antiporter duplication domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.926821 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 57 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGATA TAGCATTAAC GGTCAGTATT CTGGCTTTGG TGGCAGTCGT CGGTTTGTTT
ATCGGCAACG TCAAATTTCG CGGCATAGGA TTAGGTATTG GCGGCGTGCT GTTTGGTGGG
ATCATCGTCG GCCATTTTGT TTCTCAGGCG GGGATGACAT TAAGTAGCGA TATGCTGCAT
GTTATTCAGG AATTTGGCCT GATCCTGTTC GTTTATACCA TCGGGATTCA GGTAGGGCCG
GGCTTCTTTG CCTCATTGCG CGTCTCCGGA TTACGCCTCA ACCTGTTTGC TGTTCTGATT
GTCATCATCG GGGGTCTGGT TACCGCCATC CTGCATAAAC TGTTTGATAT TCCACTGCCG
GTAGTGCTGG GGATTTTCTC CGGTGCGGTA ACCAATACGC CAGCGCTGGG GGCAGGGCAG
CAGATCTTGC GCGACCTGGG TACACCAATG GAAATGGTCG ATCAGATGGG GATGAGTTAC
GCGATGGCGT ATCCATTCGG TATTTGCGGG ATTTTGTTCA CCATGTGGAT GTTGCGGGTT
ATTTTCCGCG TCAATGTCGA GACAGAAGCC CAGCAGCACG AGTCTTCTCG CACCAATGGC
GGCGCGCTGA TCAGGACTAT CAATATTCGC GTTGAGAACC CTAACCTGCA TGATTTAGCC
ATTAAAGATG TACCGATTCT CAACGGCGAC AAAATTATCT GCTCGCGTCT GAAACGCGAA
GAAACCCTAA AAGTACCTTC GCCAGATACC ATTATCCAAC TGGGCGATTT GCTGCATCTG
GTGGGGCAGC CAGCGGATTT ACATAATGCG CAACTGGTGA TTGGTCAGGA GGTCGATACC
TCGTTGTCCA CGAAAGGCAC TGATTTACGC GTCGAGCGTG TGGTGGTCAC CAATGAAAAC
GTGCTCGGTA AACGTATTCG CGACCTGCAC TTTAAAGAAC GCTATGACGT TGTTATCTCG
CGCCTGAACC GTGCCGGGGT CGAACTGGTC GCCAGTGGCG ATATCAGCCT GCAGTTCGGC
GATATCCTCA ACCTGGTGGG GCGTCCGTCC GCAATTGATG CCGTTGCCAA TGTGCTGGGG
AATGCGCAGC AAAAACTGCA ACAGGTTCAG ATGTTGCCGG TGTTTATTGG TATCGGGCTT
GGCGTATTGT TAGGTTCTAT TCCCGTCTTT GTGCCGGGAT TCCCGGCCGC GTTGAAACTG
GGACTGGCAG GCGGCCCGCT GATTATGGCG TTGATCCTCG GGCGTATCGG CAGTATCGGC
AAGCTGTACT GGTTTATGCC GCCAAGCGCC AACCTCGCGC TGCGGGAGCT GGGGATCGTA
CTGTTCCTCT CGGTAGTGGG GCTGAAATCT GGTGGGGATT TTGTAAATAC CCTGGTCAAT
GGCGAAGGGC TAAGCTGGAT TGGATATGGT GCCCTGATCA CCGCCGTTCC GTTGATTACT
GTTGGTATTC TGGCGCGGAT GTTAGCCAAA ATGAATTACC TGACCATGTG CGGGATGCTG
GCTGGCTCCA TGACCGATCC ACCGGCGCTG GCATTTGCTA ATAATCTTCA TCCAACGAGC
GGTGCAGCGG CGCTCTCTTA CGCCACTGTC TATCCGTTAG TGATGTTCCT GCGCATTATC
ACCCCCCAAT TACTGGCGGT GCTCTTCTGG AGTATCGGTT AA
|
|---|
| Protein sequence | MSDIALTVSI LALVAVVGLF IGNVKFRGIG LGIGGVLFGG IIVGHFVSQA GMTLSSDMLH
VIQEFGLILF VYTIGIQVGP GFFASLRVSG LRLNLFAVLI VIIGGLVTAI LHKLFDIPLP
VVLGIFSGAV TNTPALGAGQ QILRDLGTPM EMVDQMGMSY AMAYPFGICG ILFTMWMLRV
IFRVNVETEA QQHESSRTNG GALIRTINIR VENPNLHDLA IKDVPILNGD KIICSRLKRE
ETLKVPSPDT IIQLGDLLHL VGQPADLHNA QLVIGQEVDT SLSTKGTDLR VERVVVTNEN
VLGKRIRDLH FKERYDVVIS RLNRAGVELV ASGDISLQFG DILNLVGRPS AIDAVANVLG
NAQQKLQQVQ MLPVFIGIGL GVLLGSIPVF VPGFPAALKL GLAGGPLIMA LILGRIGSIG
KLYWFMPPSA NLALRELGIV LFLSVVGLKS GGDFVNTLVN GEGLSWIGYG ALITAVPLIT
VGILARMLAK MNYLTMCGML AGSMTDPPAL AFANNLHPTS GAAALSYATV YPLVMFLRII
TPQLLAVLFW SIG
|
|---|
| |