| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_3967 |
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| Symbol | rfaQ |
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| ID | 6146256 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | - |
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| Start bp | 4045090 |
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| End bp | 4046148 |
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| Gene Length | 1059 bp |
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| Protein Length | 352 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 641618793 |
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| Product | lipopolysaccharide core biosynthesis protein |
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| Protein accession | YP_001745932 |
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| Protein GI | 170682581 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0859] ADP-heptose:LPS heptosyltransferase |
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| TIGRFAM ID | [TIGR02201] lipopolysaccharide heptosyltransferase III, putative |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.00179779 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 61 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGATAAGC CATTTCGAAG AATTTTGCTC ATTAAGATGC GTTTTCATGG GGATATGTTA
TTAACTACTC CCGTCATTAG TTCGCTGAAA AAAAATTACC CTGACGCAAA AATCGATGTG
CTGCTTTATC AGGACACCAT CCCGATCCTG TCTGAAAATC CAGAGATTAA CGCGCTCTAC
GGCATAAAAA ATAAAAAAGC AAAAGCCTCA GAAAAAATTG CCAACTTTTT CCATCTCATC
AAGATATTAC GTGCCAATAA GTATGACCTT ATCGTTAATC TTACCGATCA ATGGATGGTT
GCTATACTGG TTCGCTTATT AAATGCCCGT GTGAAAATTT CCCAGGATTA TCATCATCGG
CAGTCTGCTT TTTGGCGTAA TAGTTTCACT CATTTGGTGC CGTTGCAGGG TGGAAATGTG
GTGGAAAGTA ACTTATCCGT GCTGACGCCA TTGGGACTTG AATCGTTGGT GAAGCAGACA
ACCATGAGTT ACCCGCCTGC AAGCTGGAAA CGTATGCGTC GCGAACTTGA TCACGCTGGT
GTTGGACAAA ATTATGTGGT TATCCAACCT ACGGCGCGGC AAATCTTCAA ATGCTGGGAC
AACGCCAAGT TTTCCGCTGT GATTGATGCC TTACATGCTC GTGGTTATGA AGTCGTTCTG
ACGTCCGGCC CAGATAAAGA CGATCTGGCC TGCGTCAATG AAATTGCGCA GGGATGCCAG
ACGCCACCAG TAACGGCGCT GGCCGGAAAG GTGACCTTCC CGGAACTTGG TGCGTTAATC
GATCATGCGC AGCTGTTTAT TGGCGTTGAT TCCGCACCGG CGCATATTGC CGCTGCAGTT
AATACGCCGC TGATATCGCT GTTTGGTGCG ACAGACCATA TTTTCTGGCG TCCCTGGTCA
AATAACATGA TTCAATTCTG GGCGGGAGAT TACCGGGAAA TGCCAACGCG CGATCAGCGT
GACCGAAATG AGATGTATCT TTCGGTTATT CCGGCGGCAG ATGTCATTGC AGCTGTCGAT
AAATTACTTC CCTCCTCCAC GACAGGTACG TCGTTATGA
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| Protein sequence | MDKPFRRILL IKMRFHGDML LTTPVISSLK KNYPDAKIDV LLYQDTIPIL SENPEINALY
GIKNKKAKAS EKIANFFHLI KILRANKYDL IVNLTDQWMV AILVRLLNAR VKISQDYHHR
QSAFWRNSFT HLVPLQGGNV VESNLSVLTP LGLESLVKQT TMSYPPASWK RMRRELDHAG
VGQNYVVIQP TARQIFKCWD NAKFSAVIDA LHARGYEVVL TSGPDKDDLA CVNEIAQGCQ
TPPVTALAGK VTFPELGALI DHAQLFIGVD SAPAHIAAAV NTPLISLFGA TDHIFWRPWS
NNMIQFWAGD YREMPTRDQR DRNEMYLSVI PAADVIAAVD KLLPSSTTGT SL
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