| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_3820 |
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| Symbol | gadB |
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| ID | 6145366 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | - |
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| Start bp | 3886816 |
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| End bp | 3888216 |
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| Gene Length | 1401 bp |
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| Protein Length | 466 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 641618646 |
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| Product | glutamate decarboxylase GadB |
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| Protein accession | YP_001745786 |
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| Protein GI | 170679884 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0076] Glutamate decarboxylase and related PLP-dependent proteins |
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| TIGRFAM ID | [TIGR01788] glutamate decarboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 0.143383 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACCAGA AGCTGTTAAC GGATTTCCGC TCAGAACTAC TCGATTCACG TTTTGGCGCA
AAGGCCATTT CTACTATCGC GGAGTCAAAA CGATTTCCGC TGCACGAAAT GCGAGATGAT
GTTGCATTTC AGATTATCAA TGATGAATTA TATCTTGATG GCAACGCTCG TCAGAACCTG
GCCACTTTCT GCCAGACCTG GGACGACGAA AACGTCCATA AATTGATGGA TTTGTCGATC
AATAAAAACT GGATCGACAA AGAAGAATAT CCGCAATCTG CAGCCATCGA CCTGCGTTGC
GTAAACATGG TTGCCGATCT GTGGCATGCG CCTGCACCGA AAAATGGTCA GGCCGTTGGC
ACCAACACCA TTGGTTCTTC CGAGGCCTGT ATGCTCGGCG GGATGGCGAT GAAATGGCGT
TGGCGCAAGC GTATGGAAGC CGCAGGTAAG CCGACCAACA AACCAAACCT GGTGTGCGGT
CCGGTACAAA TCTGCTGGCA TAAATTCGCC CGCTACTGGG ATGTGGAGCT GCGTGAGATC
CCTATGCGCC CCGGTCAGTT GTTTATGGAC CCGAAACGCA TGATTGAAGC CTGCGACGAA
AACACCATCG GCGTGGTGCC GACTTTTGGC GTGACCTACA CCGGTAACTA TGAGTTCCCA
CAGCCGCTGC ACGATGCGCT GGATAAATTC CAGGCCGACA CCGGTATCGA CATCGACATG
CACATCGACG CTGCCAGCGG TGGCTTCCTG GCACCGTTCG TCGCCCCGGA TATCGTCTGG
GACTTCCGCC TGCCGCGTGT GAAATCGATC AGTGCTTCAG GCCATAAATT CGGTCTGGCT
CCGCTGGGCT GCGGCTGGGT TATCTGGCGT GATGAAGAAG CGCTGCCGCA GGAACTGGTG
TTCAACGTTG ACTATCTGGG TGGTCAGATT GGGACTTTCG CCATCAACTT CTCCCGCCCG
GCAGGTCAGG TGATTGCACA GTACTATGAA TTCCTGCGCC TTGGCCGTGA AGGCTATACC
AAAGTACAGA ACGCTTCCTA CCAGGTTGCT GCCTATCTGG CGGATGAAAT CGCCAAACTG
GGGCCGTATG AGTTCATCTG TACCGGTCGC CCGGACGAAG GCATCCCGGC GGTTTGCTTC
AAACTGAAAG ATGGTGAAGA CCCGGGATAC ACCCTCTACG ACCTCTCTGA ACGTCTGCGC
CTGCGCGGCT GGCAGGTTCC GGCCTTCACT CTCGGCGGTG AAGCCACTGA CATCGTGGTG
ATGCGCATTA TGTGTCGTCG CGGCTTCGAA ATGGACTTTG CTGAACTGTT GCTGGAAGAC
TACAAAGCCT CCCTGAAATA TCTCAGCGAT CACCCGAAAC TGCAGGGTAT TGCCCAGCAG
AACAGCTTTA AACATACCTG A
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| Protein sequence | MDQKLLTDFR SELLDSRFGA KAISTIAESK RFPLHEMRDD VAFQIINDEL YLDGNARQNL
ATFCQTWDDE NVHKLMDLSI NKNWIDKEEY PQSAAIDLRC VNMVADLWHA PAPKNGQAVG
TNTIGSSEAC MLGGMAMKWR WRKRMEAAGK PTNKPNLVCG PVQICWHKFA RYWDVELREI
PMRPGQLFMD PKRMIEACDE NTIGVVPTFG VTYTGNYEFP QPLHDALDKF QADTGIDIDM
HIDAASGGFL APFVAPDIVW DFRLPRVKSI SASGHKFGLA PLGCGWVIWR DEEALPQELV
FNVDYLGGQI GTFAINFSRP AGQVIAQYYE FLRLGREGYT KVQNASYQVA AYLADEIAKL
GPYEFICTGR PDEGIPAVCF KLKDGEDPGY TLYDLSERLR LRGWQVPAFT LGGEATDIVV
MRIMCRRGFE MDFAELLLED YKASLKYLSD HPKLQGIAQQ NSFKHT
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