| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_3817 |
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| Symbol | mdtF |
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| ID | 6146253 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | + |
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| Start bp | 3881059 |
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| End bp | 3884172 |
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| Gene Length | 3114 bp |
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| Protein Length | 1037 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 641618643 |
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| Product | multidrug resistance protein MdtF |
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| Protein accession | YP_001745783 |
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| Protein GI | 170682414 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 0.0885908 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTAACT ATTTTATTGA TCGCCCGGTT TTTGCCTGGG TACTTGCCAT TATTATGATG
CTTGCAGGTG GTCTGGCGAT CATGAACTTA CCGGTTGCGC AGTATCCGCA GATTGCGCCA
CCGACCATTA CCATCAGCGC TACCTATCCG GGTGCCGATG CGCAAACAGT AGAAGACTCG
GTCACTCAGG TGATTGAGCA AAATATGAAT GGGCTTGATG GCCTGATGTA CATGTCTTCA
ACCAGCGATG CGGCAGGTAA TGCCTCCATC ACTCTGACCT TCGAGACTGG GACATCGCCT
GATATCGCAC AGGTTCAGGT GCAAAATAAA CTGCAGCTCG CTATGCCTTC ATTACCTGAA
GCGGTGCAGC AGCAGGGGAT TAGCGTCGAT AAGTCGAGCA GTAATATCCT GATGGTAGCG
GCATTTATTT CTGATAACGG CAGCCTCAAC CAGTACGATA TCGCGGACTA TGTAGCGTCT
AATATCAAAG ACCCGCTAAG CCGTACCGCG GGCGTTGGTA GCGTACAGCT CTTTGGTTCC
GAGTACGCCA TGCGTATCTG GCTGGACCCG CAAAAACTCA ATAAATATAA CCTGGTACCT
TCCGATGTTA TTTCCCAGAT TAAGGTGCAA AACAACCAGA TTTCCGGTGG TCAACTGGGT
GGCATGCCAC AGGCGGCAGA CCAGCAACTG AACGCCTCGA TCATTGTGCA GACGCGTCTG
CAAACACCGG AAGAATTTGG CAAAATCCTG TTGAAAGTTC AGCAAGATGG TTCGCAAGTG
CTGCTGCGTG ATGTCGCCCG CGTCGAACTT GGGGCGGAAG ATTATTCCAC CGTGGCGCGC
TATAACGGCA AACCTGCTGC CGGGATCGCC ATCAAACTGG CTACCGGAGC AAACGCCCTG
GATACCTCGC GAGCGGTGAA AGAGGAGCTG AACCGTTTAT CGGCTTATTT CCCTGCAAGC
CTGAAGACGG TTTATCCTTA CGACACCACA CCGTTTATCA AAATTTCTAT TCAGGAAGTT
TTCAAAACGC TGGTTGAGGC TATCATCCTC GTCTTCCTGG TCATGTATCT GTTTTTGCAG
AATTTCCGCG CCACAATCAT CCCGACGATT GCCGTACCGG TGGTTATTCT CGGGACGTTT
GCGATCTTGT CGGCGGTCGG TTTCACCATC AACACGTTAA CTATGTTCGG GATGGTGCTG
GCGATAGGGT TACTGGTGGA TGACGCCATC GTGGTGGTGG AGAACGTCGA GCGTGTCATT
GCGGAAGATA AGCTACCGCC GAAGGAAGCG ACGCATAAAT CGATGAGGCA GATCCAACGT
GCGCTGGTCG GGATTGCCGT TGTTCTTTCC GCAGTGTTTA TGCCGATGGC CTTTATGAGC
GGTGCAACCG GGGAGATCTA CCGACAGTTC TCCATCACGC TGATCTCCTC CATGCTGCTT
TCAGTATTTG TGGCAATGAG CCTGACCCCT GCCCTGTGCG CCACCATTCT GAAAGCCGCG
CCGGAAGGCG GTCACAAACC TAACGCCCTG TTCGCACGCT TCAACACGCT GTTTGAAAAA
TCAACTCAGC ACTATACCGA CAGCACCCGT TCGCTGTTGC GTTGTACCGG TCGCTACATG
GTGGTCTACC TGCTGATTTG CGCCGGGATG GCGGTGCTGT TCCTGCGTAC GCCGACCTCT
TTCTTACCAG AAGAGGATCA GGGGGTATTT ATGACCACCG CTCAGTTACC TTCCGGTGCC
ACCATGGTTA ACACCACGAA AGTGCTGCAA CAGGTGACGG ATTATTATCT GACTAAAGAG
AAAGATAATG TTCAGTCGGT GTTTACCGTT GGCGGCTTTG GCTTCAGCGG CCAGGGGCAA
AACAACGGTC TGGCGTTTAT CAGCCTCAAA CCGTGGTCTG AACGTGTCGG TGAGGAAAAC
TCGGTTACCG CGATCATTCA GCGGGCAATG ATTGCGTTAA GCAGTATCAA TAAAGCCGTC
GTCTTCCCGT TCAACTTACC CGCGGTGGCT GAACTGGGTA CCGCGTCAGG TTTTGATATG
GAACTGCTGG ACAACGGCAA CCTGGGGCAC GAAAAACTGA CCCAGGCGCG AAACGAGCTG
TTATCACTGG CAGCGCAATC ACCGAATCAG GTCACCGGGG TTCGCCCGAA CGGCCTGGAA
GATACGCCGA TGTTCAAAGT GAACGTCAAC GCTGCGAAAG CCGAGGCTAT GGGCGTGGCG
CTGTCTGATA TCAACCAGAC AATTTCCACC GCCTTCGGCA GCAGCTACGT GAACGACTTC
CTCAACCAGG GGCGGGTGAA AAAAGTGTAT GTCCAGGCAG GCACGCCGTT CCGTATGTTG
CCGGATAACA TCAACCAATG GTATGTACGC AACGCCTCTG GCACGATGGC ACCGCTTTCT
GCCTACTCGT CTACCGAATG GACCTATGGT TCACCGCGAC TGGAACGCTA CAACGGCATC
CCGTCAATGG AGATTTTAGG TGAAGCGGCG GCCGGTAAAA GTACCGGTGA CGCCATGAAA
TTTATGGCAG ACCTGGTCGC TAAACTTCCG GCAGGCGTCG GCTACTCATG GACCGGACTG
TCGTATCAGG AAGCGTTATC CTCAAATCAG GCTCCCGCGC TGTATGCCAT TTCACTGGTC
GTGGTGTTCC TCGCCCTCGC CGCACTTTAT GAGAGCTGGT CAATTCCGTT CTCGGTGATG
TTGGTTGTAC CGTTAGGCGT CGTTGGCGCA TTACTGGCCA CCGATCTACG CGGCTTAAGT
AATGACGTCT ACTTCCAGGT TGGTTTGCTG ACCACCATCG GGCTTTCCGC CAAAAACGCC
ATCCTGATTG TCGAATTTGC CGTTGAGATG ATGCAGAAAG AAGGGAAAAC GCCGATAGAG
GCGATCATCG AAGCGGCGCG AATGCGTTTA CGCCCAATCC TGATGACCTC TCTGGCCTTT
ATTCTCGGCG TGCTGCCGCT GGTTATCAGT CATGGTGCCG GTTCTGGCGC GCAAAACGCG
GTAGGTACCG GCGTGATGGG CGGGATGTTT GCCGCAACAG TGCTGGCAAT TTACTTCGTT
CCGGTCTTTT TCGTTGTAGT GGAACATCTC TTTGCCCGCT TTAAAAAAGC GTAA
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| Protein sequence | MANYFIDRPV FAWVLAIIMM LAGGLAIMNL PVAQYPQIAP PTITISATYP GADAQTVEDS
VTQVIEQNMN GLDGLMYMSS TSDAAGNASI TLTFETGTSP DIAQVQVQNK LQLAMPSLPE
AVQQQGISVD KSSSNILMVA AFISDNGSLN QYDIADYVAS NIKDPLSRTA GVGSVQLFGS
EYAMRIWLDP QKLNKYNLVP SDVISQIKVQ NNQISGGQLG GMPQAADQQL NASIIVQTRL
QTPEEFGKIL LKVQQDGSQV LLRDVARVEL GAEDYSTVAR YNGKPAAGIA IKLATGANAL
DTSRAVKEEL NRLSAYFPAS LKTVYPYDTT PFIKISIQEV FKTLVEAIIL VFLVMYLFLQ
NFRATIIPTI AVPVVILGTF AILSAVGFTI NTLTMFGMVL AIGLLVDDAI VVVENVERVI
AEDKLPPKEA THKSMRQIQR ALVGIAVVLS AVFMPMAFMS GATGEIYRQF SITLISSMLL
SVFVAMSLTP ALCATILKAA PEGGHKPNAL FARFNTLFEK STQHYTDSTR SLLRCTGRYM
VVYLLICAGM AVLFLRTPTS FLPEEDQGVF MTTAQLPSGA TMVNTTKVLQ QVTDYYLTKE
KDNVQSVFTV GGFGFSGQGQ NNGLAFISLK PWSERVGEEN SVTAIIQRAM IALSSINKAV
VFPFNLPAVA ELGTASGFDM ELLDNGNLGH EKLTQARNEL LSLAAQSPNQ VTGVRPNGLE
DTPMFKVNVN AAKAEAMGVA LSDINQTIST AFGSSYVNDF LNQGRVKKVY VQAGTPFRML
PDNINQWYVR NASGTMAPLS AYSSTEWTYG SPRLERYNGI PSMEILGEAA AGKSTGDAMK
FMADLVAKLP AGVGYSWTGL SYQEALSSNQ APALYAISLV VVFLALAALY ESWSIPFSVM
LVVPLGVVGA LLATDLRGLS NDVYFQVGLL TTIGLSAKNA ILIVEFAVEM MQKEGKTPIE
AIIEAARMRL RPILMTSLAF ILGVLPLVIS HGAGSGAQNA VGTGVMGGMF AATVLAIYFV
PVFFVVVEHL FARFKKA
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